Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tomentosiformis_20[refseq_20GCF_5F000390325.2_202013-05- 16] 159,548 sequences; 1,688,466,321 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq151841 104 1e-18 seq121450 104 1e-18 seq112944 104 1e-18 seq149394 98.7 6e-17 seq146454 98.7 6e-17 seq144239 98.7 6e-17 seq123480 98.7 6e-17 seq80528 98.7 6e-17 seq80105 98.7 6e-17 seq69974 98.7 6e-17 seq67516 98.7 6e-17 seq13557 98.7 6e-17 seq82428 96.9 2e-16 seq113841 95.1 7e-16 seq112955 95.1 7e-16 seq103374 95.1 7e-16 seq52667 95.1 7e-16 seq44735 95.1 7e-16 seq125104 91.5 8e-15 seq136888 89.7 3e-14 seq87854 89.7 3e-14 seq66455 89.7 3e-14 seq109775 87.8 1e-13 seq78590 86.0 4e-13 seq70166 84.2 1e-12 seq111291 80.6 2e-11 seq100228 80.6 2e-11 seq103442 78.8 5e-11 >seq151841 Length=4719 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 767 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 768 GTATTAGCTCT 778 >seq121450 Length=350596 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168191 GCTCGTGTCTACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 168132 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 168131 GTATTAGCTCT 168121 >seq112944 Length=2094 Score = 104 bits (114), Expect = 1e-18 Identities = 67/71 (94%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 382 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 383 GTATTAGCTCT 393 >seq149394 Length=89147 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85693 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 85634 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 85633 GTATTAGCTCT 85623 >seq146454 Length=7857 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 1168 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1167 GTATTAGCTCT 1157 >seq144239 Length=232116 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218332 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 218391 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 218392 GTATTAGCTCT 218402 >seq123480 Length=8567 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3328 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 3269 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3268 GTATTAGCTCT 3258 >seq80528 Length=96504 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73153 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 73212 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 73213 GTATTAGCTCT 73223 >seq80105 Length=94088 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 70414 GCCCGCGTTGACCTTTTATCTAATAAATTCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 70473 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 70474 GTATTAGCTCT 70484 Score = 78.8 bits (86), Expect = 5e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 64651 GACCTTTTATCTTATAAATGCATCTCTTCCAGAAGTCGGAGTTTGTTGCAC 64601 >seq69974 Length=15222 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6675 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 6616 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 6615 GTATTAGCTCT 6605 >seq67516 Length=1899 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 515 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 516 GTATTAGCTCT 526 >seq13557 Length=141508 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43077 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 43136 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 43137 GTATTAGCTCT 43147 >seq82428 Length=104393 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 55837 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 55778 Query 8909 GCTCT 8913 ||||| Sbjct 55777 GCTCT 55773 >seq113841 Length=41439 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16563 GCCCGCGTCGATCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 16622 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16623 GTATTAGCTCT 16633 >seq112955 Length=3240 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 450 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCAC 391 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 390 GTATTAGCTCT 380 >seq103374 Length=31538 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30499 GCCCGCGTTGATGTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 30440 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 30439 GTATTAGCTCT 30429 >seq52667 Length=4155 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 556 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAATTCGGTGTTTGTTGCAC 615 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 616 GTATTAGCTCT 626 >seq44735 Length=34090 Score = 95.1 bits (104), Expect = 7e-16 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 33949 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTACAC 33890 >seq125104 Length=65414 Score = 91.5 bits (100), Expect = 8e-15 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42761 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 42712 >seq136888 Length=4190 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 4175 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGAGTTTGTTGCAC 4116 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4115 GTATTAGCTCT 4105 >seq87854 Length=4950 Score = 89.7 bits (98), Expect = 3e-14 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||||||||||||||||||||||| | |||||||||||| | Sbjct 748 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGAGTTTGTTGCACGTA 807 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 808 TTAGCTCT 815 >seq66455 Length=50999 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||| |||||| ||||||||||||||||||| | Sbjct 35884 GCCCGCGTTGACCTTTTATCTAATAAATGCAACCCTTCTAGAAGTCGGGGTTTGTTGCTC 35825 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 35824 GTATTAGCTCT 35814 >seq109775 Length=37761 Score = 87.8 bits (96), Expect = 1e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24052 CGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 23997 >seq78590 Length=36356 Score = 86.0 bits (94), Expect = 4e-13 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||| Sbjct 10517 ACCTTTTATCTAATAAATGCATCCTTTCCAGAAGTTGGGGTTTGTTGCACGTATTAGCTC 10458 Query 8913 T 8913 | Sbjct 10457 T 10457 >seq70166 Length=135225 Score = 84.2 bits (92), Expect = 1e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 55524 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTTCAGAAATCGGGATTTGTTGCA 55582 >seq111291 Length=9173 Score = 80.6 bits (88), Expect = 2e-11 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| Sbjct 4308 GACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCTGGGTTTGTTTCACG 4257 >seq100228 Length=32748 Score = 80.6 bits (88), Expect = 2e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTG 8898 || || || ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 10743 GCCCGCGTCGACCTTTTATCTAATAAATTCATCCCTTCCAGAAGTCGGGGTTTG 10690 >seq103442 Length=41555 Score = 78.8 bits (86), Expect = 5e-11 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||| ||||||||||||||||| ||||||||| || | ||| ||| Sbjct 37506 GACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCTGGGTTTGTTACATGTATTAGCT 37447 Query 8912 CT 8913 || Sbjct 37446 CT 37445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28355412926544