Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 2e-16 seq1 96.9 2e-16 seq2 95.1 7e-16 seq10 93.3 2e-15 seq5 93.3 2e-15 seq7 84.2 1e-12 >seq11 Length=50367376 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 21151621 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 21151680 Query 8909 GCTCT 8913 ||||| Sbjct 21151681 GCTCT 21151685 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 21186993 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 21187052 Query 8909 GCTCT 8913 ||||| Sbjct 21187053 GCTCT 21187057 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 21202964 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 21203023 Query 8909 GCTCT 8913 ||||| Sbjct 21203024 GCTCT 21203028 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 21235674 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 21235733 Query 8909 GCTCT 8913 ||||| Sbjct 21235734 GCTCT 21235738 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 21273459 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 21273518 Query 8909 GCTCT 8913 ||||| Sbjct 21273519 GCTCT 21273523 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 21280074 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 21280133 Query 8909 GCTCT 8913 ||||| Sbjct 21280134 GCTCT 21280138 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| Sbjct 21920848 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTAGGGGTTTGTTGCACGTATTA 21920789 Query 8909 GCTCT 8913 ||||| Sbjct 21920788 GCTCT 21920784 >seq1 Length=52205531 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 12290485 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 12290544 Query 8909 GCTCT 8913 ||||| Sbjct 12290545 GCTCT 12290549 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 12378313 GTTGACCTTTTATCTAATAAATGTGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 12378372 Query 8909 GCTCT 8913 ||||| Sbjct 12378373 GCTCT 12378377 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 12511105 GTTGACCTTTTATCTAATAAATGCGTGCCTTCCAGAAGTCGGGGTTTGTTGCAC 12511052 Score = 86.0 bits (94), Expect = 4e-13 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 8853 TGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 12131251 TGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTTCAC 12131200 >seq2 Length=49040938 Score = 95.1 bits (104), Expect = 7e-16 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | Sbjct 5467116 TTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 5467057 Query 8910 CTCT 8913 |||| Sbjct 5467056 CTCT 5467053 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||| Sbjct 9193229 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGATTTTGCTGCATGTATTA 9193288 Query 8909 GCTCT 8913 ||||| Sbjct 9193289 GCTCT 9193293 >seq10 Length=43275151 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 17872187 GTTGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGATTTGTTGCACGTATTA 17872246 Query 8909 GCTCT 8913 ||||| Sbjct 17872247 GCTCT 17872251 >seq5 Length=40819286 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 |||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| Sbjct 12973501 GTTGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGTTTTGTTGCACGTATTA 12973442 Query 8909 GCTCT 8913 ||||| Sbjct 12973441 GCTCT 12973437 >seq7 Length=51758522 Score = 84.2 bits (92), Expect = 1e-12 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG--ATT 8908 ||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||| || Sbjct 24169373 GTTTACCTATTATCTAATAAATGCATCCCTTCGAGAAGTCGCGGTTTGTTGCACGTATTT 24169432 Query 8909 GCTCT 8913 ||||| Sbjct 24169433 GCTCT 24169437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406173743024