Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq9615 163 1e-36 seq7 163 1e-36 seq1153 159 1e-35 seq1971 123 9e-25 seq36 111 6e-21 seq1 82.4 3e-12 >seq9615 Length=156766 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||||| Sbjct 71567 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCCG 71508 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 71507 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAAAAATTACCAAACGTCTAGCATTCCC 71450 >seq7 Length=3634883 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||||| Sbjct 3391991 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCCG 3391932 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3391931 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAAAAATTACCAAACGTCTAGCATTCCC 3391874 >seq1153 Length=68128 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||||| Sbjct 23842 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCCG 23783 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 23782 CTTCAATGGGATCTTTTATCCTAGTCGGAGGAAAAATTACCAAACGTCTAGCATTCCC 23725 >seq1971 Length=31893 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || ||| || ||| | | ||| ||||| | |||||||||| Sbjct 17295 TTTATGATACTATGCAATTTATGCGACTAGATGTTCAAACAATATGCATGGGATTAGCCG 17354 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||| |||||| |||||||| |||||||| ||||||||| | |||||||||||| Sbjct 17355 TTTCAATAGGATCTTTTATCCTGTTCGGAGGAAAAATTACCATGCATCTAGCATTCCC 17412 >seq36 Length=1800412 Score = 111 bits (122), Expect = 6e-21 Identities = 96/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||| | |||||||||| Sbjct 1553393 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAATATATATGGGATTAGCCG 1553452 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| ||||| | || | || | |||||||||||||||| ||||||| Sbjct 1553453 CTTCAATGAGATCTTTTATCTTAGTTAG-GGGGGAATTACCAAACGTCTAACATTCCC 1553509 >seq1 Length=8759900 Score = 82.4 bits (90), Expect = 3e-12 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 || ||||| |||||||| || ||| |||||| | | |||| |||| | ||||||||| Sbjct 127124 TTAATGATGCTATGCAATTTATGCGACCAGATGTACAAACAGCATGCATGTGATTAGCCG 127183 Query 62 CTTCAATGGGATCTGTTATCCTGGT 86 |||||| ||||||| |||||||||| Sbjct 127184 CTTCAACGGGATCTTTTATCCTGGT 127208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19044397003200