Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2514 163 1e-36 seq2 136 2e-28 seq6 118 4e-23 seq8 87.8 7e-14 >seq2514 Length=157033 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||||| Sbjct 71756 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCCG 71697 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 71696 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAAAAATTACCAAACGTCTAGCATTCCC 71639 >seq2 Length=23562801 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||||||||| | | ||||||||| | ||||||| | Sbjct 13819757 TTTATGATACTATGCAATTTGTGCTACCAGTTGTACAAACAGTATGCATGGGATTAGTTG 13819698 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| ||||| |||| |||||||||||| |||||||||||| |||||||||||| Sbjct 13819697 TTTCAATGAGATCTTTTATTCTGGTCGGAGGAAAAATTACCAAACATCTAGCATTCCC 13819640 >seq6 Length=26894541 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||||||| ||||| |||| | || | ||| ||||| | |||||||||| Sbjct 10802463 TTTATGATAATATGCAATTTGTGTGACCAAATATACAAACAATATGCATGGGATTAGCCG 10802404 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| || | ||||| ||||||||||| |||||||||| || Sbjct 10802403 CTTCAATGGGATCTTTTATTCTATTTAGAGGAAAAATTACCAAATGTCTAGCATTTCC 10802346 >seq8 Length=18835763 Score = 87.8 bits (96), Expect = 7e-14 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 || ||||||||||| || || ||| |||||| | | ||||||||| | ||||||||| Sbjct 2528310 TTAATGATACTATGTAATTTATGCGACCAGATGTACAAACAGTATGCATGTGATTAGCCG 2528369 Query 62 CTTCAATGGGATCTGTTATCCTGGTC 87 |||||| ||||||| ||||||||||| Sbjct 2528370 CTTCAACGGGATCTTTTATCCTGGTC 2528395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045876283520