Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq14 98.7 6e-17 seq392 95.1 7e-16 seq17 95.1 7e-16 seq10 95.1 7e-16 seq9 95.1 7e-16 seq8 95.1 7e-16 seq15 91.5 8e-15 seq16 78.8 5e-11 >seq14 Length=17716633 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17562967 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 17562908 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17562907 GTATTAGCTCT 17562897 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17521114 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 17521055 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17521054 GTATTAGCTCT 17521044 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17671143 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 17671084 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17671083 GTATTAGCTCT 17671073 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17679525 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 17679466 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17679465 GTATTAGCTCT 17679455 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 17507119 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCTAGAAGTCGGGGTTTGTTGCAC 17507060 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17507059 GTATTAGCTCT 17507049 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||| Sbjct 17195923 GTCGACCTTTTATCTAATAAATGCGTCCCTTTCAGAAGTCGAGGTTTGTTGCACGTATTA 17195982 Query 8909 GCTCT 8913 ||||| Sbjct 17195983 GCTCT 17195987 >seq392 Length=17510 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3400 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 3341 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3340 GTATTAGCTCT 3330 >seq17 Length=14661173 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2269756 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2269697 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2269696 GTATTAGCTCT 2269686 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2280403 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2280344 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2280343 GTATTAGCTCT 2280333 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2308318 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2308259 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2308258 GTATTAGCTCT 2308248 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2331676 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2331617 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2331616 GTATTAGCTCT 2331606 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2358470 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2358411 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2358410 GTATTAGCTCT 2358400 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2368577 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2368518 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2368517 GTATTAGCTCT 2368507 Score = 86.0 bits (94), Expect = 4e-13 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2319429 GCCCGCGTCGACCTTT-ATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2319371 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2319370 GTATTAGCTCT 2319360 Score = 86.0 bits (94), Expect = 4e-13 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 2345877 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTG-TGCAC 2345819 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2345818 GTATTAGCTCT 2345808 >seq10 Length=21538349 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4797019 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4797078 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4797079 GTATTAGCTCT 4797089 >seq9 Length=12942059 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 114362 GCCCGCGTCGACCTTTTATCTAATAAATGCATCTCTTCCAGAAGTCGGGGTTTGTTGCAC 114421 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 114422 GTATTAGCTCT 114432 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 241468 GCCCGCGTTGACCTTTTATCTAATAAATACGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 241527 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 241528 GTATTAGCTCT 241538 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 318911 GCCCGCGTCGGCCTTTTATCTAATAAATACGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 318970 Score = 82.4 bits (90), Expect = 4e-12 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||| ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 332997 GCCCGCGTCGACCTTT-ATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTTCAC 333055 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 333056 GTATTAGCTCT 333066 >seq8 Length=18835763 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 16161573 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 16161632 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16161633 GTATTAGCTCT 16161643 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 16193145 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 16193204 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 16193205 GTATTAGCTCT 16193215 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8846 CTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| || | ||||||||||||||||||||||||||| |||||| |||||||||| |||| Sbjct 16313012 CTCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCTAGAAGTTGGGGTTTGTTACACG 16312953 >seq15 Length=15134944 Score = 91.5 bits (100), Expect = 8e-15 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 9339216 GCCCGTGTCGACCTTTTATTTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 9339157 >seq16 Length=14134809 Score = 78.8 bits (86), Expect = 5e-11 Identities = 56/62 (90%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||| ||| Sbjct 5218350 GACCTTTTATCTAATAAATGCGTCCCTTCTAGAAGTCAGGGTCTGTTGCACGTATTAGCT 5218409 Query 8912 CT 8913 || Sbjct 5218410 CT 5218411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405596595992