Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Primula_20veris_20[genbank_20GCA_5F000788445.1_202014-12-03] 8,756 sequences; 309,692,940 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1385 87.8 1e-13 seq70 87.8 1e-13 seq1086 86.0 4e-13 seq73 78.8 5e-11 >seq1385 Length=128055 Score = 87.8 bits (96), Expect = 1e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||| ||||||||||||||| || |||||||||| Sbjct 37829 GCTCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCAGGATTTGTTGCAC 37888 Query 8905 G 8905 | Sbjct 37889 G 37889 >seq70 Length=498087 Score = 87.8 bits (96), Expect = 1e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 30067 GCCCGCGTCGACTTTTTATCTAATAAATGCGTCCCTTCCAGAAGTCGGGGTTTGTTGCAC 30008 Query 8905 G 8905 | Sbjct 30007 G 30007 >seq1086 Length=77272 Score = 86.0 bits (94), Expect = 4e-13 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 68512 GCCCGCGTCGACCTTTTATCTAATAAATGCGTCCCTTCCAGAAGTC-GGGTTTGTTGCAC 68454 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 68453 GTATTAGCTCT 68443 >seq73 Length=736034 Score = 78.8 bits (86), Expect = 5e-11 Identities = 51/55 (93%), Gaps = 1/55 (2%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 || |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 621445 GTCGACCTTTTATCTAATAAATGTGTCCCT-CCAGAAGTCGGGGTTTGTTGCACG 621498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28403601827568