Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20avium_20[refseq_20GCF_5F002207925.1_202017-06-12] 10,148 sequences; 272,361,615 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1275 93.3 2e-15 seq4383 89.7 3e-14 seq93 84.2 1e-12 >seq1275 Length=234140 Score = 93.3 bits (102), Expect = 2e-15 Identities = 58/60 (97%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 167470 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 167529 >seq4383 Length=29509 Score = 89.7 bits (98), Expect = 3e-14 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2326 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 2278 >seq93 Length=380271 Score = 84.2 bits (92), Expect = 1e-12 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 286913 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTAGGGGTTTGTTGCAC 286865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28403156983344