Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq8164 163 1e-36 seq5 163 1e-36 >seq8164 Length=157712 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| || | ||| ||||| | |||||||||| Sbjct 72587 TTTATGATACTATGCAATTTGTGCGACCAGATATACAGACAATATGCATGGGATTAGCCG 72528 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 72527 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 72470 >seq5 Length=26133890 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| || | ||| ||||| | |||||||||| Sbjct 3501461 TTTATGATACTATGCAATTTGTGCGACCAGATATACAGACAATATGCATGGGATTAGCCG 3501520 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 3501521 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 3501578 Score = 163 bits (180), Expect = 1e-36 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| || | ||| ||||| | |||||||||| Sbjct 3506253 TTTATGATACTATGCAATTTGTGCGACCAGATATACAGACAATATGCATGGGATTAGCCG 3506312 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 3506313 CTTCAATGGGATCTTTTATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 3506370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19044699275520