Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq172 87.8 1e-13 seq6 87.8 1e-13 seq387 86.0 4e-13 seq7 80.6 2e-11 seq3 80.6 2e-11 >seq172 Length=36390 Score = 87.8 bits (96), Expect = 1e-13 Identities = 57/60 (95%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| Sbjct 26513 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTAGCTCT 26572 >seq6 Length=21292200 Score = 87.8 bits (96), Expect = 1e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 5777164 ACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACG 5777114 >seq387 Length=12500 Score = 86.0 bits (94), Expect = 4e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5880 CCTTTTTTCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 5831 >seq7 Length=17044513 Score = 80.6 bits (88), Expect = 2e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2453956 CCTTCTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCAC 2454004 >seq3 Length=24358521 Score = 80.6 bits (88), Expect = 2e-11 Identities = 54/58 (93%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| Sbjct 201813 TTTTATCTAATAAATGCATCCCTTTCAGAAGTTGGGGTTTGTTGCACGTATTAGCTCT 201870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28403791014192