Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Quercus_20lobata_20[genbank_20GCA_5F001633185.1_202016-04-28] 40,156 sequences; 759,241,194 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq8536 95.1 7e-16 seq1970 95.1 7e-16 seq84 95.1 7e-16 seq6118 93.3 2e-15 seq4972 93.3 2e-15 seq4931 89.7 3e-14 seq3817 89.7 3e-14 seq10593 86.0 4e-13 seq4726 86.0 4e-13 seq3117 86.0 4e-13 seq631 84.2 1e-12 seq5539 80.6 2e-11 seq2856 80.6 2e-11 >seq8536 Length=56880 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 40819 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 40760 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 40759 GTATTAGCTCT 40749 >seq1970 Length=50579 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19487 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 19546 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 19547 GTATTAGCTCT 19557 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48278 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 48337 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 48338 GTATTAGCTCT 48348 >seq84 Length=90702 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47238 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 47297 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 47298 GTATTAGCTCT 47308 >seq6118 Length=43452 Score = 93.3 bits (102), Expect = 2e-15 Identities = 58/60 (97%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 41921 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 41862 >seq4972 Length=50394 Score = 93.3 bits (102), Expect = 2e-15 Identities = 58/60 (97%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 17089 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 17030 >seq4931 Length=248149 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83214 GCCCGCGTCGGCCGTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 83155 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 83154 GTATTAGCTCT 83144 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 91772 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCTCTTCCAGAAGTCGGGGTTTGTTGCAC 91831 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 91832 GTATTAGCTCT 91842 >seq3817 Length=113315 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 56723 GCCCGCGTCGGCCTTTTGTCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 56664 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 56663 GTATTAGCTCT 56653 >seq10593 Length=48225 Score = 86.0 bits (94), Expect = 4e-13 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 32717 CCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACG 32668 >seq4726 Length=66208 Score = 86.0 bits (94), Expect = 4e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 4954 GCTCATGTTGGCCTTTTATGTAATAAATGCATCCCTTCCAGAAGTTAGGGTTTGTTGCAC 4895 >seq3117 Length=93246 Score = 86.0 bits (94), Expect = 4e-13 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 8859 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58740 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 58694 >seq631 Length=233705 Score = 84.2 bits (92), Expect = 1e-12 Identities = 56/60 (93%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 10492 CCTTTTATCTAAAAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 10551 >seq5539 Length=74217 Score = 80.6 bits (88), Expect = 2e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 9122 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTAGGGTTTGTTGCAC 9074 >seq2856 Length=133587 Score = 80.6 bits (88), Expect = 2e-11 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 113484 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTACAC 113530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28393567266768