Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_033774.1
Length=8913
Score E
Sequences producing significant alignments: (Bits) Value
seq64514 98.7 6e-17
seq52883 98.7 6e-17
seq62262 96.9 2e-16
>seq64514
Length=205
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 104
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 103 GTATTAGCTCT 93
>seq52883
Length=552
Score = 98.7 bits (108), Expect = 6e-17
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 45
Query 8905 G-ATT-GCTCT 8913
| ||| |||||
Sbjct 44 GTATTAGCTCT 34
>seq62262
Length=280
Score = 96.9 bits (106), Expect = 2e-16
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 224 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 165
Query 8909 GCTCT 8913
|||||
Sbjct 164 GCTCT 160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28385713465296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |