Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq938 159 1e-35 seq948 150 7e-33 seq207 145 3e-31 seq957 131 6e-27 seq945 123 9e-25 seq968 113 2e-21 seq724 89.7 2e-14 >seq938 Length=6919174 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| ||| |||| ||||| | || ||||||| Sbjct 4923065 TTTATGATACTATGCAATTTGTACAACCAGATGTCCATACAATATGCATGGGGTTAGCCG 4923124 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4923125 CTTCAATGGGATCTTTTATCCTGGTCGGGGGAGAAATTACCAAACGTCTAGCATTCCC 4923182 >seq948 Length=7662486 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| | || |||||| ||| |||| ||||| | || ||||||| Sbjct 756618 TTTATGATACTATGCAATTCGTATGACCAGATGTCCATACAATATGCATGGGGTTAGCCG 756677 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 756678 CTTCAATGGGATCTTTTATCCTGGTCGGGGGAGAAATTACCAAACGTCTAGCATTCCC 756735 >seq207 Length=565375 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| | || | |||||| ||| |||| ||||| | || ||||||| Sbjct 150960 TTTATGATACTATGCAATTCGTACGACCAGATGTCCATACAATATGCATGGGGTTAGCCG 150901 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 150900 CTTAAATGGGATCTTTTATCCTGGTCGGGAGAGAAATTACCAAACGTCTAGCATTCCC 150843 >seq957 Length=6255442 Score = 131 bits (144), Expect = 6e-27 Identities = 103/124 (83%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||| | |||||| ||| |||| ||||| | | ||||||| Sbjct 5867317 TTTATGATACTATGCAATTTGTACGACCAGATGTCCATACAATATGCATGGAGTTAGCCG 5867258 Query 62 CTT------CAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCAT 115 ||| ||||||||||| ||||| ||||||| |||||||||||||||||| |||||| Sbjct 5867257 CTTTCGCTTCAATGGGATCTTTTATCTTGGTCGGGGGAGAAATTACCAAACGTGTAGCAT 5867198 Query 116 TCCC 119 |||| Sbjct 5867197 TCCC 5867194 >seq945 Length=13627481 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || |||| |||||| ||| |||| ||||| | | ||||| | Sbjct 10206680 TTTATGATACTATGAAATTTGTATGACCAGATGTCCATACAATATGCATGGAGTTAGCTG 10206621 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| |||||||||| || | ||||||||||||||| ||||||||||| Sbjct 10206620 CTTCAATGGTATCTTTTATCCTGGTTGGGGAAGAAATTACCAAACGCCTAGCATTCCC 10206563 Score = 116 bits (128), Expect = 1e-22 Identities = 96/116 (83%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||| ||| | | | |||| |||| | || ||||| | ||||||||| Sbjct 3177077 TTTATGATATTATACAATTCATAGGATCAGATATCCATYCAATATGCAT-GGATTAGCCT 3177135 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTC 117 |||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||| Sbjct 3177136 CTTCAATGGGATCTTTTATCCTGATCGGGGGAGAAATTACCAAATGTCTAGCATTC 3177191 >seq968 Length=582318 Score = 113 bits (124), Expect = 2e-21 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTAT--GCGTAGGATTAGC 59 ||||||||||||||||| | | | |||| || |||| ||| || | || ||||| Sbjct 337694 TTTATGATACTATGCAATTCATATGATCAGATGTC--TACAATATATGCATGGGGTTAGC 337637 Query 60 CGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| || Sbjct 337636 CGCTTCAATGGGATCTTTTATCCCGGTCGGCAGAGAAATTACCAAACGTCTAGCATTTCC 337577 >seq724 Length=950629 Score = 89.7 bits (98), Expect = 2e-14 Identities = 95/120 (79%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTAC-CAGAAATCCGTACAGTATGCGTAGGATTAGCC 60 ||||||||||||||||| | | | || |||| ||| |||| ||||| | || | | Sbjct 948115 TTTATGATACTATGCAATTCATACGACGCAGATGTCCCTACA-TATGCATGGGGGTTCGC 948173 Query 61 GCTTCAATGGGATCTGTTATCCTGGTCGGAG-GAGAAATTACCAAACGTCTAG-CATTCC 118 |||||| || |||| ||||||||||| | | ||||||||||||||||||||| |||||| Sbjct 948174 GCTTCATGGGCATCTTTTATCCTGGTCTGGGCGAGAAATTACCAAACGTCTAGCCATTCC 948233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046196054720