Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq25763 141 4e-30 seq22998 141 4e-30 seq25698 132 2e-27 seq25691 132 2e-27 seq25609 132 2e-27 seq25521 132 2e-27 seq25749 123 9e-25 seq25602 118 4e-23 >seq25763 Length=163161 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||| | Sbjct 76317 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCTG 76258 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| |||||||||||||| |||||||||| Sbjct 76257 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAATTACCAAACGTTTAGCATTCCC 76200 >seq22998 Length=2504 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||||| | |||||||| | Sbjct 309 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATGCATGGGATTAGCTG 250 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| |||||||||||||| |||||||||| Sbjct 249 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAATTACCAAACGTTTAGCATTCCC 192 >seq25698 Length=994805 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| | |||| | | ||| |||||| |||||||| | Sbjct 642292 TTTATGATACTATGCAATTTGTGCGATCAGATGTACAAACATTATGCGCGGGATTAGCTG 642351 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| |||||||||||||| |||||||||| Sbjct 642352 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAATTACCAAACGTTTAGCATTCCC 642409 >seq25691 Length=910092 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||||||| | | |||||||| | Sbjct 135069 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAGTATACATGGGATTAGCTG 135128 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| |||||||||||||| ||||| |||| Sbjct 135129 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAATTACCAAACGTTTAGCAATCCC 135186 >seq25609 Length=532863 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| |||||| | | ||||||||| | |||||||| | Sbjct 67287 TTTATGATACTATGCAATTTGTGTGACCAGATGTACAAACAGTATGCATGGGATTAGCTG 67228 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| |||||||| ||||| |||||||||| Sbjct 67227 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAATTACCTAACGTTTAGCATTCCC 67170 >seq25521 Length=350421 Score = 132 bits (146), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| ||||| | ||||||| | Sbjct 130922 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAATATGCATGAGATTAGCTG 130981 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| |||||||||||||| |||||||||| Sbjct 130982 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAATTACCAAACGTTTAGCATTCCC 131039 >seq25749 Length=1851721 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | ||| | | | | |||||||| | Sbjct 268464 TTTATGATACTATGCAATTTGTGCGACCAGATGTACAAACAATTTCCATGGGATTAGCTG 268405 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || |||||| || ||||||||||| |||||||||| Sbjct 268404 CTTCAATGGCATCTTTTATCCTAGTTGGAGGAAAAGTTACCAAACGTTTAGCATTCCC 268347 >seq25602 Length=512129 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||||||||| ||||| |||||| | | ||||||| |||||||||| | Sbjct 30640 TTTATAATACTATGCAATTTGTGTGACCAGATGTACAAGTAGTATGCATAGGATTAGCTG 30699 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||||| || || ||| |||||||||||||| ||||||| || Sbjct 30700 CTTCAATGGCATCTTTTATCCTAGTTGGGGGAAAAATTACCAAACGTTTAGCATTGCC 30757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19041033051840