Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq702170 141 4e-30 seq367525 136 1e-28 seq358775 118 4e-23 >seq702170 Length=1859 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 599 TTTATGATACTATGCAGTTTGTGCGACCAGAGGTCCATACAATATGCATGGGATTAGCCG 540 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||||||| || ||||||| ||||||| ||||| ||||||| |||||||||| Sbjct 539 CGTCAATGGGATCTTTTCTCCTGGTTGGAGGAGCAATTAACAAACGTTTAGCATTCCC 482 >seq367525 Length=2563 Score = 136 bits (150), Expect = 1e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||| |||| |||||| |||||| ||| |||| ||||| | |||||||||| Sbjct 1008 TTTATGATACTGTGCAGTTTGTGCGACCAGAGGTCCATACAATATGCATGGGATTAGCCG 949 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||| ||||| || ||||||| ||||||| ||||||||||||| |||||||||| Sbjct 948 CATCAATGAGATCTTTTCTCCTGGTTGGAGGAGCAATTACCAAACGTTTAGCATTCCC 891 >seq358775 Length=14755 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||| |||| || |||||| |||||| ||| |||| |||| | | |||||||| Sbjct 13619 TTTATGATGCTATACAGTTTGTGCGACCAGAGGTCCATACAAGATGCATGGAATTAGCCG 13678 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 | |||||||||||| || ||||||| ||||||| ||||| |||| || |||||||||| Sbjct 13679 CGTCAATGGGATCTTTTCTCCTGGTTGGAGGAGCAATTAACAAATGTTTAGCATTCCC 13736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18880933923840