Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq396660 98.7 6e-17 seq359541 98.7 6e-17 seq549470 95.1 7e-16 >seq396660 Length=446 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 265 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 266 GTATTAGCTCT 276 >seq359541 Length=1563 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 333 CGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTATTGCACGTA 274 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 273 TTAGCTCT 266 >seq549470 Length=5376 Score = 95.1 bits (104), Expect = 7e-16 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1732 GCCCGTGTCGACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGGTTTGTTGCAT 1791 Query 8905 GA 8906 || Sbjct 1792 GA 1793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28152567795264