Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq171 86.0 4e-13 seq170638 82.4 4e-12 >seq171 Length=61800 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 56580 GCCCGCGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGCGATGTTGCAC 56639 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 56640 GTATTAGCTCT 56650 >seq170638 Length=1027 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 968 GCCCGCGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGCGATGTTGCAC 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28308061304160