Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq8733 159 1e-35 seq14288 145 3e-31 seq20245 118 4e-23 seq16492 96.9 1e-16 seq11035 93.3 2e-15 >seq8733 Length=57960 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| | Sbjct 34021 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCATAGGATTAGCTG 34080 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 34081 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 34138 >seq14288 Length=57142 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| | Sbjct 4206 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 4147 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||| || ||||||||||| || ||||||| Sbjct 4146 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 4089 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| | Sbjct 6044 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 5985 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||| || ||||||||||| || ||||||| Sbjct 5984 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 5927 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| | Sbjct 7091 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 7032 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||| || ||||||||||| || ||||||| Sbjct 7031 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 6974 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| | Sbjct 7415 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 7356 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||| || |||| |||||| || ||||||| Sbjct 7355 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACAAAACGTATAACATTCCC 7298 >seq20245 Length=23079 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||||||| ||||| || | | ||| |||| ||||| | |||||||||| Sbjct 13763 TTTATGATATTATGCAATTTGTGTGACAAAATGTCCATACAATATGCCTGGGATTAGCCG 13704 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||| | ||||||||| || | ||||| ||||||||||||| Sbjct 13703 CTTCAATGGAATCTTTTATCTTAGTCGGAGGATGAACTGCCAAATGTCTAGCATTCCC 13646 >seq16492 Length=3998 Score = 96.9 bits (106), Expect = 1e-16 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 |||||||| |||||| |||||| | ||| ||| | || ||||| | |||||||||||| Sbjct 3825 TATGATACCATGCAATTTGTGCGGCTAGATGTCCATCCAATATGCATGGGATTAGCCGCT 3884 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAA 96 |||||||||||| ||||||| | ||||||||| Sbjct 3885 TCAATGGGATCTTTTATCCTAATAGGAGGAGAA 3917 >seq11035 Length=73976 Score = 93.3 bits (102), Expect = 2e-15 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 ||||| | ||||||||| |||||| ||||||| ||||| ||||| ||||||||||||||| Sbjct 15465 TATGCATCGGATTAGCCACTTCAACGGGATCTTTTATCATGGTCAGAGGAGAAATTACCA 15406 Query 104 AACGTCTAG 112 ||||||||| Sbjct 15405 AACGTCTAG 15397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19033137515520