Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_001747.1
Length=5987
Score E
Sequences producing significant alignments: (Bits) Value
seq8733 159 1e-35
seq14288 145 3e-31
seq20245 118 4e-23
seq16492 96.9 1e-16
seq11035 93.3 2e-15
>seq8733
Length=57960
Score = 159 bits (176), Expect = 1e-35
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| |
Sbjct 34021 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCATAGGATTAGCTG 34080
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||||| ||||||| || ||||||||||| ||||||||||
Sbjct 34081 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 34138
>seq14288
Length=57142
Score = 145 bits (160), Expect = 3e-31
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| |
Sbjct 4206 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 4147
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||| ||||||||| || ||||||||||| || |||||||
Sbjct 4146 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 4089
Score = 145 bits (160), Expect = 3e-31
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| |
Sbjct 6044 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 5985
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||| ||||||||| || ||||||||||| || |||||||
Sbjct 5984 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 5927
Score = 145 bits (160), Expect = 3e-31
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| |
Sbjct 7091 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 7032
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||| ||||||||| || ||||||||||| || |||||||
Sbjct 7031 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 6974
Score = 141 bits (156), Expect = 4e-30
Identities = 102/118 (86%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| ||||||||||||| |||| |||| ||||| ||| |||| |
Sbjct 7415 TTTATGATACTATGCAATTTGTGCTACCAGATATCCATACAATATGCATAGAATTAATTG 7356
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||| ||||||||| || |||| |||||| || |||||||
Sbjct 7355 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACAAAACGTATAACATTCCC 7298
>seq20245
Length=23079
Score = 118 bits (130), Expect = 4e-23
Identities = 97/118 (82%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||| ||||||| ||||| || | | ||| |||| ||||| | ||||||||||
Sbjct 13763 TTTATGATATTATGCAATTTGTGTGACAAAATGTCCATACAATATGCCTGGGATTAGCCG 13704
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
||||||||| |||| ||||| | ||||||||| || | ||||| |||||||||||||
Sbjct 13703 CTTCAATGGAATCTTTTATCTTAGTCGGAGGATGAACTGCCAAATGTCTAGCATTCCC 13646
>seq16492
Length=3998
Score = 96.9 bits (106), Expect = 1e-16
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63
|||||||| |||||| |||||| | ||| ||| | || ||||| | ||||||||||||
Sbjct 3825 TATGATACCATGCAATTTGTGCGGCTAGATGTCCATCCAATATGCATGGGATTAGCCGCT 3884
Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAA 96
|||||||||||| ||||||| | |||||||||
Sbjct 3885 TCAATGGGATCTTTTATCCTAATAGGAGGAGAA 3917
>seq11035
Length=73976
Score = 93.3 bits (102), Expect = 2e-15
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103
||||| | ||||||||| |||||| ||||||| ||||| ||||| |||||||||||||||
Sbjct 15465 TATGCATCGGATTAGCCACTTCAACGGGATCTTTTATCATGGTCAGAGGAGAAATTACCA 15406
Query 104 AACGTCTAG 112
|||||||||
Sbjct 15405 AACGTCTAG 15397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19033137515520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |