Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq4574 98.7 6e-17 seq45027 93.3 2e-15 seq31255 86.0 4e-13 seq38565 84.2 1e-12 seq4432 82.4 4e-12 seq2963 80.6 2e-11 >seq4574 Length=39985 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39893 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 39952 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 39953 GTATTAGCTCT 39963 >seq45027 Length=19207 Score = 93.3 bits (102), Expect = 2e-15 Identities = 64/70 (91%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 8846 CTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 11701 CTCGCGTCAACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACG 11642 Query 8906 -ATT-GCTCT 8913 ||| ||||| Sbjct 11641 TATTAGCTCT 11632 >seq31255 Length=1432 Score = 86.0 bits (94), Expect = 4e-13 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1066 GACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCACG 1117 >seq38565 Length=91735 Score = 84.2 bits (92), Expect = 1e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||| |||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 13395 TGTCGACCTTTTATTTAATAAATGCATCCCTTCCAAAAGTCAGGGTTTGTTGCACG 13450 >seq4432 Length=61854 Score = 82.4 bits (90), Expect = 4e-12 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||| Sbjct 57719 GACCTTTTATCTAATAAATACATCCCTTCCAAAAGTCAGGGTTTGTTGCACGTATTAGCT 57660 Query 8912 CT 8913 || Sbjct 57659 CT 57658 >seq2963 Length=192782 Score = 80.6 bits (88), Expect = 2e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||||| | |||| |||||||| |||| Sbjct 12312 TTGACCTTTTATCTAATAAATGCATCCCTTCCACATGTCGTGGTTTGTTCCACG 12365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28386054768192