Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_001747.1
Length=5987
Score E
Sequences producing significant alignments: (Bits) Value
seq14814 145 3e-31
seq5640 145 3e-31
seq6106 100 1e-17
seq13456 96.9 1e-16
>seq14814
Length=19516
Score = 145 bits (160), Expect = 3e-31
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| |||||| |||| |||| ||||| ||||||||||
Sbjct 897 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTT 838
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||| ||||| ||||||||| ||||||| || ||||||||||| ||||||| ||
Sbjct 837 CTTCAATGAGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTTCC 780
>seq5640
Length=120874
Score = 145 bits (160), Expect = 3e-31
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| || || |||||| ||||||||| ||||| || ||||||| |
Sbjct 9298 TTTATGATACTATGCAATTTTTGAGACCAGATATCCGTACAATATGCCTAAGATTAGCTG 9239
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||||| ||||||| || ||||||||||| || |||||||
Sbjct 9238 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATATCATTCCC 9181
>seq6106
Length=48799
Score = 100 bits (110), Expect = 1e-17
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102
|||||| | |||||||||||||||||||||||| ||||| ||||| |||||||||||| |
Sbjct 592 GTATGCATCGGATTAGCCGCTTCAATGGGATCTTTTATCATGGTCAGAGGAGAAATTATC 651
Query 103 AAACGTCTAG 112
||||||||||
Sbjct 652 AAACGTCTAG 661
>seq13456
Length=31164
Score = 96.9 bits (106), Expect = 1e-16
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 16 CAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCT 75
||| |||||| |||||| |||| |||| ||| | ||||||||| ||| |||||||||||
Sbjct 21668 CAATTTGTGCGACCAGATATCCATACAATATTCCTAGGATTAGTTGCTGCAATGGGATCT 21609
Query 76 GTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111
||||| ||| |||||| || ||||||||||| ||
Sbjct 21608 TTTATCATGGCTGGAGGACAACTTACCAAACGTATA 21573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19037444323200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |