Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq14814 145 3e-31 seq5640 145 3e-31 seq6106 100 1e-17 seq13456 96.9 1e-16 >seq14814 Length=19516 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| Sbjct 897 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTT 838 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| ||||||||| ||||||| || ||||||||||| ||||||| || Sbjct 837 CTTCAATGAGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTTCC 780 >seq5640 Length=120874 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| || || |||||| ||||||||| ||||| || ||||||| | Sbjct 9298 TTTATGATACTATGCAATTTTTGAGACCAGATATCCGTACAATATGCCTAAGATTAGCTG 9239 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| || ||||||| Sbjct 9238 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATATCATTCCC 9181 >seq6106 Length=48799 Score = 100 bits (110), Expect = 1e-17 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102 |||||| | |||||||||||||||||||||||| ||||| ||||| |||||||||||| | Sbjct 592 GTATGCATCGGATTAGCCGCTTCAATGGGATCTTTTATCATGGTCAGAGGAGAAATTATC 651 Query 103 AAACGTCTAG 112 |||||||||| Sbjct 652 AAACGTCTAG 661 >seq13456 Length=31164 Score = 96.9 bits (106), Expect = 1e-16 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 16 CAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCT 75 ||| |||||| |||||| |||| |||| ||| | ||||||||| ||| ||||||||||| Sbjct 21668 CAATTTGTGCGACCAGATATCCATACAATATTCCTAGGATTAGTTGCTGCAATGGGATCT 21609 Query 76 GTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 ||||| ||| |||||| || ||||||||||| || Sbjct 21608 TTTATCATGGCTGGAGGACAACTTACCAAACGTATA 21573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19037444323200