Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq12586 98.7 6e-17 seq6727 98.7 6e-17 seq21516 95.1 7e-16 seq13948 95.1 7e-16 seq6726 95.1 7e-16 seq8977 93.3 2e-15 seq38450 86.0 4e-13 seq21903 86.0 4e-13 seq14141 86.0 4e-13 seq3969 86.0 4e-13 seq12587 84.2 1e-12 seq17806 78.8 5e-11 >seq12586 Length=67103 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15334 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 15275 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 15274 GTATTAGCTCT 15264 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 22510 GCCCGTGTTGATCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCAC 22451 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 22450 GTATTAGCTCT 22440 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/58 (95%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| Sbjct 53427 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTTCACGTATTAGCTCT 53370 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/57 (95%), Gaps = 2/57 (4%) Strand=Plus/Minus Query 8859 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| Sbjct 240 TTTATCTAATAAATGCATCCCTTCCAGAAATCGGGGTTTGTTGCACGTATTAGCTCT 184 >seq6727 Length=117554 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3001 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 3060 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 3061 GTATTAGCTCT 3071 >seq21516 Length=48886 Score = 95.1 bits (104), Expect = 7e-16 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11304 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAY 11245 Query 8905 G 8905 | Sbjct 11244 G 11244 >seq13948 Length=37752 Score = 95.1 bits (104), Expect = 7e-16 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 35149 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCSTTCCAGAAGTCGGGGTTTGTTGCAC 35208 Query 8905 G 8905 | Sbjct 35209 G 35209 >seq6726 Length=33565 Score = 95.1 bits (104), Expect = 7e-16 Identities = 59/61 (97%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 15000 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC 15059 Query 8913 T 8913 | Sbjct 15060 T 15060 >seq8977 Length=34800 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 14515 GCCCGCGTTGACCTTTTATCTAATGAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCAC 14456 Query 8905 G 8905 | Sbjct 14455 G 14455 >seq38450 Length=1394 Score = 86.0 bits (94), Expect = 4e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 614 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCAAGAAGTCAGGGTTTGTTGCAC 555 >seq21903 Length=8256 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||| ||||||||| |||| ||||||||||| Sbjct 1982 GCCCGCGTCGACCTTTTATCTAATAAATGCATCACTTCCAGAATTCGGCGTTTGTTGCAC 2041 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 2042 GTATTAGCTCT 2052 >seq14141 Length=8459 Score = 86.0 bits (94), Expect = 4e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 || |||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 3434 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAATTTGGGGTTTGTTGCACG 3380 >seq3969 Length=59312 Score = 86.0 bits (94), Expect = 4e-13 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 || |||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 12624 GTCGACCTTTTATCTAATAAATGTATCCCTTCCAGAAGTCGGGTTTTGTTGCACG 12678 >seq12587 Length=23565 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || |||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 11575 GCCCGCGTCGATCTTTTATCGAATAAATGCATACCTTCCAGAAGTCGGGGTTTGTTGCAC 11516 Query 8905 G 8905 | Sbjct 11515 G 11515 >seq17806 Length=3026 Score = 78.8 bits (86), Expect = 5e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTG 8901 || || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1881 GTCGATCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTG 1831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28392661599720