Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq3145 159 1e-35 seq1 159 1e-35 seq9 131 6e-27 seq12 95.1 5e-16 >seq3145 Length=155461 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| | Sbjct 72857 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTG 72798 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 72797 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 72740 >seq1 Length=98543444 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| | Sbjct 1868295 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTG 1868236 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 1868235 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 1868178 >seq9 Length=72482091 Score = 131 bits (144), Expect = 6e-27 Identities = 93/107 (87%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| | ||| || ||||||| | Sbjct 64062035 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATGTGCCTAAGATTAGCTG 64061976 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGT 108 |||||||||||||| ||| ||||| ||||||| || ||||||||||| Sbjct 64061975 CTTCAATGGGATCTTTTACCCTGGCCGGAGGACAACTTACCAAACGT 64061929 >seq12 Length=67145203 Score = 95.1 bits (104), Expect = 5e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102 |||||| | |||||||||||||||||| ||||| ||||| ||||| |||||||||||| | Sbjct 64913064 GTATGCATTGGATTAGCCGCTTCAATGCGATCTTTTATCATGGTCAGAGGAGAAATTATC 64913123 Query 103 AAACGTCTAG 112 |||||||||| Sbjct 64913124 AAACGTCTAG 64913133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19045744833600