Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_001747.1
Length=5987
Score E
Sequences producing significant alignments: (Bits) Value
seq3145 159 1e-35
seq1 159 1e-35
seq9 131 6e-27
seq12 95.1 5e-16
>seq3145
Length=155461
Score = 159 bits (176), Expect = 1e-35
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| |
Sbjct 72857 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTG 72798
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||||| ||||||| || ||||||||||| ||||||||||
Sbjct 72797 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 72740
>seq1
Length=98543444
Score = 159 bits (176), Expect = 1e-35
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| |
Sbjct 1868295 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTG 1868236
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119
|||||||||||||| ||||||||| ||||||| || ||||||||||| ||||||||||
Sbjct 1868235 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 1868178
>seq9
Length=72482091
Score = 131 bits (144), Expect = 6e-27
Identities = 93/107 (87%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61
||||||||||||||||| |||||| |||||| |||| |||| | ||| || ||||||| |
Sbjct 64062035 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATGTGCCTAAGATTAGCTG 64061976
Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGT 108
|||||||||||||| ||| ||||| ||||||| || |||||||||||
Sbjct 64061975 CTTCAATGGGATCTTTTACCCTGGCCGGAGGACAACTTACCAAACGT 64061929
>seq12
Length=67145203
Score = 95.1 bits (104), Expect = 5e-16
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102
|||||| | |||||||||||||||||| ||||| ||||| ||||| |||||||||||| |
Sbjct 64913064 GTATGCATTGGATTAGCCGCTTCAATGCGATCTTTTATCATGGTCAGAGGAGAAATTATC 64913123
Query 103 AAACGTCTAG 112
||||||||||
Sbjct 64913124 AAACGTCTAG 64913133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19045744833600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |