Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 6e-17 seq37 95.1 7e-16 seq5 95.1 7e-16 seq31 93.3 2e-15 seq11 93.3 2e-15 seq6 91.5 8e-15 seq289 89.7 3e-14 seq22 87.8 1e-13 seq12 80.6 2e-11 >seq1 Length=98543444 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66329626 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 66329685 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 66329686 GTATTAGCTCT 66329696 >seq37 Length=62247 Score = 95.1 bits (104), Expect = 7e-16 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-G 8909 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 19727 TTGACCTTTTATATAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 19668 Query 8910 CTCT 8913 |||| Sbjct 19667 CTCT 19664 >seq5 Length=65875088 Score = 95.1 bits (104), Expect = 7e-16 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG--ATTGCTC 8912 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 34100392 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTTGCTC 34100333 Query 8913 T 8913 | Sbjct 34100332 T 34100332 >seq31 Length=79909 Score = 93.3 bits (102), Expect = 2e-15 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 264 Score = 89.7 bits (98), Expect = 3e-14 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 8852 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 58498 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAATCTGGGTTTGTTGCACG 58551 Score = 87.8 bits (96), Expect = 1e-13 Identities = 57/60 (95%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct 31884 CCTTTTATCTAATAAATGTATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 31943 >seq11 Length=56302525 Score = 93.3 bits (102), Expect = 2e-15 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17961039 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 17961089 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct 17939672 ACCTTTTATCTAATAAATGCATCACTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC 17939731 Query 8913 T 8913 | Sbjct 17939732 T 17939732 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| Sbjct 18627652 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCATGTATTAGCTC 18627711 Query 8913 T 8913 | Sbjct 18627712 T 18627712 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 18702942 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGTGTTTGTTGCAC 18703001 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 18703002 GTATTAGCTCT 18703012 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 18722384 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAATTTGGGGTTTGTTGCAC 18722443 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 18722444 GTATTAGCTCT 18722454 Score = 87.8 bits (96), Expect = 1e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 17861705 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTTCAC 17861755 Score = 87.8 bits (96), Expect = 1e-13 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 18652251 GTCGACCTTTTATCTACTAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTATTA 18652310 Query 8909 GCTCT 8913 ||||| Sbjct 18652311 GCTCT 18652315 Score = 86.0 bits (94), Expect = 4e-13 Identities = 57/61 (93%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||| Sbjct 18690947 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTGGTGTTTGTTGCACGTATTAGCTC 18691006 Query 8913 T 8913 | Sbjct 18691007 T 18691007 Score = 84.2 bits (92), Expect = 1e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 17880113 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTGAGGTTTGTTGCAC 17880163 Score = 82.4 bits (90), Expect = 4e-12 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 |||||||||| |||||||||||||||||| |||||| ||||||||||||||| ||| ||| Sbjct 17852467 GACCTTTTATTTAATAAATGCATCCCTTCTAGAAGTTGGGGTTTGTTGCACGTATTAGCT 17852526 Query 8912 CT 8913 || Sbjct 17852527 CT 17852528 Score = 78.8 bits (86), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||| |||||| ||||||| ||||| | ||| Sbjct 18669716 GTCGACCTTTTATCTAATAAATGCATCCCTTCAAGAAGTTGGGGTTTATTGCATGTATTA 18669775 Query 8909 GCTCT 8913 ||||| Sbjct 18669776 GCTCT 18669780 >seq6 Length=49751636 Score = 91.5 bits (100), Expect = 8e-15 Identities = 65/71 (92%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 11551804 GCCCGCGTTGAACTTTTATCTAATAAATGCATCCCTT-CAGAAGTCGGGGTTTGTTGCAC 11551746 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11551745 GTATTAGCTCT 11551735 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 11231589 GCCCGCGTGGACCTTTTATCTAATAAATACATCCCTTCCAGAAGTCGGGGTTTGTTGCAT 11231648 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 11231649 GTATTAGCTCT 11231659 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 20127737 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTTCAGAAGTTGGGGTTTGTTGCAC 20127678 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 20127677 GTATTAGCTCT 20127667 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| Sbjct 1520828 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCTGGGTTTGTTGCATGTATTAGCT 1520769 Query 8912 CT 8913 || Sbjct 1520768 CT 1520767 Score = 78.8 bits (86), Expect = 5e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||| |||||||| |||||||||||| ||||||||||| |||||||| ||||| Sbjct 11547413 GCCCGCGTTGAACTTTTATCCAATAAATGCATCTCTTCCAGAAGTTGGGGTTTGGTGCAC 11547354 Query 8905 G 8905 | Sbjct 11547353 G 11547353 >seq289 Length=5442 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct 2599 ACCTTTTATCTAATAAATGCATCGCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC 2658 Query 8913 T 8913 | Sbjct 2659 T 2659 >seq22 Length=200883 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||| Sbjct 141192 GACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTACACGTATTAGCT 141251 Query 8912 CT 8913 || Sbjct 141252 CT 141253 >seq12 Length=67145203 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||| |||||||||||||||||||||||||||| |||||||| || || Sbjct 52472309 GCCCGCGTCGACCTTTCATCTAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGATGTAC 52472250 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 52472249 GTATTAGCTCT 52472239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405394946060