Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq10 141 4e-30 seq9 116 1e-22 seq12 100 1e-17 seq1 78.8 4e-11 >seq10 Length=82529941 Score = 141 bits (156), Expect = 4e-30 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| ||||||||| ||||| || ||||||| | Sbjct 11963630 TTTATGATACTATGCAATTTGTGCGACCAGATATCCGTACAATATGCCTAAGATTAGCTG 11963689 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| |||||| | |||||| ||||||| || ||||||||||| || ||||||| Sbjct 11963690 CTTCAATTGGATCTTTAATCCTGTCCGGAGGACAACTTACCAAACGTATAACATTCCC 11963747 >seq9 Length=84057508 Score = 116 bits (128), Expect = 1e-22 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 15 GCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATC 74 |||| |||||| |||||| |||| |||| ||||| |||||||||| |||||||||||||| Sbjct 13742739 GCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGCTGCTTCAATGGGATC 13742798 Query 75 TGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 | ||||||||| |||||| || ||||||||||| || Sbjct 13742799 TTTTATCCTGGCTGGAGGACAACTTACCAAACGTATA 13742835 >seq12 Length=83305730 Score = 100 bits (110), Expect = 1e-17 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102 |||||| | |||||||||||||||||||||||| ||||| ||||| |||||||||||| | Sbjct 80752223 GTATGCATCGGATTAGCCGCTTCAATGGGATCTTTTATCATGGTCAGAGGAGAAATTATC 80752282 Query 103 AAACGTCTAG 112 |||||||||| Sbjct 80752283 AAACGTCTAG 80752292 >seq1 Length=109333515 Score = 78.8 bits (86), Expect = 4e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGC 59 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| Sbjct 12093145 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAGGATTAGC 12093202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046397500160