Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pennellii_20[refseq_20GCF_5F001406875.1_202014-07-11] 12 sequences; 926,426,464 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 6e-17 seq7 98.7 6e-17 seq1 98.7 6e-17 seq9 93.3 2e-15 seq6 89.7 3e-14 >seq12 Length=83305730 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41406773 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 41406832 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 41406833 GTATTAGCTCT 41406843 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50849885 GCCCGCGTCGACATTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 50849826 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 50849825 GTATTAGCTCT 50849815 Score = 87.8 bits (96), Expect = 1e-13 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 22448684 GTCGACCTTTTATCTAATAAATGCATCCCTTCCATAAGTCAGGGTTTGTTGCACGTATTA 22448743 Query 8909 GCTCT 8913 ||||| Sbjct 22448744 GCTCT 22448748 Score = 82.4 bits (90), Expect = 4e-12 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 || |||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||| Sbjct 65053307 GAACTTTTATCTAATAAATGCATCCCTTCTAGAAGTCGGAGTTTGTTGCACGTATTAGCT 65053248 Query 8912 CT 8913 || Sbjct 65053247 CT 65053246 >seq7 Length=79292169 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17668893 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 17668834 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17668833 GTATTAGCTCT 17668823 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17574039 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 17573980 Query 8905 G 8905 | Sbjct 17573979 G 17573979 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 17552691 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAATTCGGGGTTTGTTGCAA 17552632 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 17552631 GTATTAGCTCT 17552621 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||| Sbjct 17630872 GACCTTTTATCTAATAAATGCATCCCTACCAGAAGTCAGGGTTTGTTGCACGTATTAGCT 17630813 Query 8912 CT 8913 || Sbjct 17630812 CT 17630811 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||| |||||||||||| |||||| ||||||| Sbjct 17530188 GCCCGCGTCGACCTTTTATCTAATAAATGCATACCTTCCAGAAGTGGGGGTTCGTTGCAC 17530129 Query 8905 G 8905 | Sbjct 17530128 G 17530128 Score = 82.4 bits (90), Expect = 4e-12 Identities = 54/57 (95%), Gaps = 2/57 (4%) Strand=Plus/Minus Query 8859 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| Sbjct 17650329 TTTATCTAATAAATGCATCCCTTCCAGAATTCGGGGTTTGTTGCACGTATTAGCTCT 17650273 >seq1 Length=109333515 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73177524 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 73177583 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 73177584 GTATTAGCTCT 73177594 >seq9 Length=84057508 Score = 93.3 bits (102), Expect = 2e-15 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 5424018 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGTTTTGTTGCACGTATTA 5424077 Query 8909 GCTCT 8913 ||||| Sbjct 5424078 GCTCT 5424082 >seq6 Length=60730942 Score = 89.7 bits (98), Expect = 3e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 ||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 10198748 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAATTCGGGGTTTGTTGCA 10198690 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 25718115 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCAAGAAGTCGGGGTTTGTAGCAC 25718174 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 25718175 GTATTAGCTCT 25718185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406396165136