Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq81441 149 2e-32 seq148336 134 5e-28 seq68052 95.1 5e-16 seq263763 89.7 2e-14 >seq81441 Length=437 Score = 149 bits (164), Expect = 2e-32 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| ||||| |||||| |||| |||| ||||| ||||||||| | Sbjct 202 TTTATGATACTATCCAATTTGTGTGACCAGATATCCATACAATATGCCTAGGATTAGTTG 261 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCC 118 |||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||| Sbjct 262 CTTCAATGGGATCTTTTATCCTGGTCGGAGGACAACTTACCAAACGTATAGCATTCC 318 >seq148336 Length=10605 Score = 134 bits (148), Expect = 5e-28 Identities = 94/107 (88%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| || ||||||| | Sbjct 143 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCCTAAGATTAGCTG 202 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGT 108 |||||||||||||| ||| ||||| ||||||| || ||||||||||| Sbjct 203 CTTCAATGGGATCTTTTACCCTGGCCGGAGGACAACTTACCAAACGT 249 >seq68052 Length=2209 Score = 95.1 bits (104), Expect = 5e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102 |||||| | |||||||||||||||||| ||||| ||||| ||||| |||||||||||| | Sbjct 528 GTATGCATTGGATTAGCCGCTTCAATGCGATCTTTTATCATGGTCAGAGGAGAAATTATC 587 Query 103 AAACGTCTAG 112 |||||||||| Sbjct 588 AAACGTCTAG 597 >seq263763 Length=20068 Score = 89.7 bits (98), Expect = 2e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 15 GCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAATGGGATC 74 |||| ||||| |||| | |||| |||| |||| |||||||||| |||||||||||| Sbjct 13644 GCAATCTGTGCGACCACATATCCATACAATATGACTAGGATTAGCTTCTTCAATGGGATA 13703 Query 75 TGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 | |||||||| || |||| || ||||||||||| || Sbjct 13704 TTTTATCCTGACCGAAGGACAACTTACCAAACGTATA 13740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18981991622400