Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20pimpinellifolium_20[genbank_20GCA_5F000230315.1_202011-10- 06] 309,180 sequences; 688,247,059 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq221302 102 5e-18 seq195220 100 2e-17 seq142129 100 2e-17 seq70792 100 2e-17 seq199799 98.7 6e-17 seq59220 98.7 6e-17 seq204243 96.9 2e-16 seq263577 95.1 7e-16 seq199215 95.1 7e-16 seq104521 93.3 2e-15 seq48903 91.5 8e-15 seq307874 89.7 3e-14 seq255459 89.7 3e-14 seq165011 89.7 3e-14 seq164156 89.7 3e-14 seq114850 89.7 3e-14 seq76410 89.7 3e-14 seq55670 89.7 3e-14 seq201891 87.8 1e-13 seq131072 87.8 1e-13 seq205209 86.0 4e-13 seq95442 86.0 4e-13 seq248744 84.2 1e-12 seq49527 84.2 1e-12 seq147160 82.4 4e-12 seq191726 80.6 2e-11 seq165703 80.6 2e-11 seq91285 80.6 2e-11 seq75204 80.6 2e-11 seq282767 78.8 5e-11 seq282766 78.8 5e-11 seq281636 78.8 5e-11 seq268368 78.8 5e-11 seq231444 78.8 5e-11 seq70352 78.8 5e-11 >seq221302 Length=355 Score = 102 bits (112), Expect = 5e-18 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 140 GCTCGTGTTGAACTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTGGTTGCAC 81 Query 8905 G 8905 | Sbjct 80 G 80 >seq195220 Length=300 Score = 100 bits (110), Expect = 2e-17 Identities = 64/67 (96%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 198 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTAT 257 Query 8908 T-GCTCT 8913 | ||||| Sbjct 258 TAGCTCT 264 >seq142129 Length=607 Score = 100 bits (110), Expect = 2e-17 Identities = 64/67 (96%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 496 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTAT 555 Query 8908 T-GCTCT 8913 | ||||| Sbjct 556 TAGCTCT 562 >seq70792 Length=309 Score = 100 bits (110), Expect = 2e-17 Identities = 64/67 (96%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 127 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACGTAT 68 Query 8908 T-GCTCT 8913 | ||||| Sbjct 67 TAGCTCT 61 >seq199799 Length=547 Score = 98.7 bits (108), Expect = 6e-17 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 471 Query 8905 G--ATTGCTCT 8913 | ||||||| Sbjct 472 GTATTTGCTCT 482 >seq59220 Length=317 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 189 GCCCGTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCAC 130 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 129 GTATTAGCTCT 119 >seq204243 Length=451 Score = 96.9 bits (106), Expect = 2e-16 Identities = 63/67 (94%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 270 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGAGTTTGTTGCACGTAT 329 Query 8908 T-GCTCT 8913 | ||||| Sbjct 330 TAGCTCT 336 >seq263577 Length=471 Score = 95.1 bits (104), Expect = 7e-16 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 TGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 135 >seq199215 Length=402 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 186 GCCCGCGTTGATCTTTTATCTAATAAATTCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 127 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 126 GTATTAGCTCT 116 >seq104521 Length=757 Score = 93.3 bits (102), Expect = 2e-15 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 374 >seq48903 Length=637 Score = 91.5 bits (100), Expect = 8e-15 Identities = 62/67 (93%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| || Sbjct 459 GTGTCGACCTTTTATCTAATAAATGCATCTCTTCCAAAAGTCGGGGTTTGTTGCACGTAT 518 Query 8908 T-GCTCT 8913 | ||||| Sbjct 519 TAGCTCT 525 >seq307874 Length=562 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| Sbjct 252 ACCTTTTATCTAATAAATGCATCGCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC 193 Query 8913 T 8913 | Sbjct 192 T 192 >seq255459 Length=314 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 87 GCCCGCGTTGATCTTTTATCTAATAAATGCATCCCTTACAGAAGTCGGGGTTTGTTGCAT 28 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 27 GTATTAGCTCT 17 >seq165011 Length=321 Score = 89.7 bits (98), Expect = 3e-14 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 ||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||| | Sbjct 139 CGTGTCGACCTTTTATCTAATAAACGCATCCCTTCTAGAAGTAGGGGTTTGTTGCACGTA 198 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 199 TTAGCTCT 206 >seq164156 Length=473 Score = 89.7 bits (98), Expect = 3e-14 Identities = 58/61 (95%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| Sbjct 154 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCATGTATTAGCTC 95 Query 8913 T 8913 | Sbjct 94 T 94 >seq114850 Length=328 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || ||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||| Sbjct 258 GCCCGTGTCGACCTTTTATCTTATAAACGCATCCCTTCCAGAAGTCAGGGTTTGTTGCAC 317 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 318 GTATTAGCTCT 328 >seq76410 Length=481 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 249 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAATCGGGGTTTGTTACAC 190 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 189 GTATTAGCTCT 179 >seq55670 Length=367 Score = 89.7 bits (98), Expect = 3e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 160 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTATTGCACG 216 >seq201891 Length=303 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||| Sbjct 56 GACCTTTTATATAATAAATGTATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 115 Query 8912 CT 8913 || Sbjct 116 CT 117 >seq131072 Length=14562 Score = 87.8 bits (96), Expect = 1e-13 Identities = 58/62 (94%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| Sbjct 5747 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCTGGGTTTGTTGCATGTATTAGCT 5806 Query 8912 CT 8913 || Sbjct 5807 CT 5808 >seq205209 Length=992 Score = 86.0 bits (94), Expect = 4e-13 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||||||||||||||||| ||| |||||||| ||||||||||||| Sbjct 196 GCCCGCGTCGACCTTTTATCTAATAAATGCATCTCTTTCAGAAGTCAGGGTTTGTTGCAC 255 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 256 GTATTAGCTCT 266 >seq95442 Length=625 Score = 86.0 bits (94), Expect = 4e-13 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| | |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 513 GTGTCAAACTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCACG 569 >seq248744 Length=477 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || ||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 365 GCCCGCGTCGATCTTTTATCTAATAAATGCAGCCCTTTCAGAAGTCGGGGTTTGTTGCAC 306 Query 8905 G 8905 | Sbjct 305 G 305 >seq49527 Length=956 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || || ||||||||||||||||||||||||||||||||||||| ||||||||| | ||| Sbjct 120 GTCGAGCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGCTTTGTTGCAAGTATTA 179 Query 8909 GCTCT 8913 ||||| Sbjct 180 GCTCT 184 >seq147160 Length=354 Score = 82.4 bits (90), Expect = 4e-12 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 ||||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||| ||| Sbjct 123 GACCTTTCATCTAATAAATGCATCCCTTCCAGAAGTTGGGGTGTGTTGCACGTATTAGCT 182 Query 8912 CT 8913 || Sbjct 183 CT 184 >seq191726 Length=393 Score = 80.6 bits (88), Expect = 2e-11 Identities = 62/71 (87%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||| |||||||||||||||||||||||||||| |||||||| || || Sbjct 206 GCCCGCGTCGACCTTTCATCTAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGATGTAC 265 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 266 GTATTAGCTCT 276 >seq165703 Length=644 Score = 80.6 bits (88), Expect = 2e-11 Identities = 60/68 (88%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || ||||||||||||||||||| ||| |||||||||||| ||||||||||||| | | Sbjct 255 CGCGTCGACCTTTTATCTAATAAATTCATGCCTTCCAGAAGTTGGGGTTTGTTGCAGGTA 196 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 195 TTAGCTCT 188 >seq91285 Length=371 Score = 80.6 bits (88), Expect = 2e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTT 8897 |||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 323 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCTGAAGTCGGGGTTT 371 >seq75204 Length=344 Score = 80.6 bits (88), Expect = 2e-11 Identities = 54/58 (93%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||| Sbjct 194 TTTTATCAAATAAATGCATCCCTTCCAGAAGTCGGGGTTCGTTGCACGTATTAGCTCT 251 >seq282767 Length=1531 Score = 78.8 bits (86), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || || |||| |||| ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1183 GTCGAACTTTAATCTTATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGGACGTATTA 1242 Query 8909 GCTCT 8913 ||||| Sbjct 1243 GCTCT 1247 >seq282766 Length=1366 Score = 78.8 bits (86), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || || |||| |||| ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1183 GTCGAACTTTAATCTTATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGGACGTATTA 1242 Query 8909 GCTCT 8913 ||||| Sbjct 1243 GCTCT 1247 >seq281636 Length=421 Score = 78.8 bits (86), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || || |||||||| ||||||||||||||||||||||||||||||| |||||| | ||| Sbjct 201 GTCGATCTTTTATCAAATAAATGCATCCCTTCCAGAAGTCGGGGTTCGTTGCATGTATTA 260 Query 8909 GCTCT 8913 ||||| Sbjct 261 GCTCT 265 >seq268368 Length=360 Score = 78.8 bits (86), Expect = 5e-11 Identities = 59/67 (88%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||| ||||||||||||||||||||||||||||||| |||| | |||||||||| | || Sbjct 118 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTTGAAGTTTGTTGCATGTAT 177 Query 8908 T-GCTCT 8913 | ||||| Sbjct 178 TAGCTCT 184 >seq231444 Length=365 Score = 78.8 bits (86), Expect = 5e-11 Identities = 59/67 (88%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-AT 8907 |||| || |||||||||||||||||||||||||||| |||| ||||||| ||||| | || Sbjct 206 GTGTCGATCTTTTATCTAATAAATGCATCCCTTCCAAAAGTTGGGGTTTTTTGCATGTAT 147 Query 8908 T-GCTCT 8913 | ||||| Sbjct 146 TAGCTCT 140 >seq70352 Length=365 Score = 78.8 bits (86), Expect = 5e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || |||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 277 GCCCGCGTCGATCTTTTATCTAATAAATGCATCCTTTTCAGAAGTCGCGGTTTGTTGCAC 218 Query 8905 G 8905 | Sbjct 217 G 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28307594729040