Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq14854 159 1e-35 seq175 159 1e-35 seq62 159 1e-35 seq15 145 3e-31 seq299 136 2e-28 seq73 136 2e-28 seq32 118 4e-23 seq305 105 3e-19 seq36 100 1e-17 >seq14854 Length=155296 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| | Sbjct 72709 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCATAGGATTAGCTG 72650 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 72649 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 72592 >seq175 Length=1275411 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| | Sbjct 23857 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCATAGGATTAGCTG 23798 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 23797 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 23740 >seq62 Length=2166112 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| |||| |||| ||||| |||||||||| | Sbjct 965070 TTTATGATACTATGCAATTTGTGCGACCAGATATCCATACAATATGCATAGGATTAGCTG 965129 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 965130 CTTCAATGGGATCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 965187 >seq15 Length=3327864 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| ||| |||||| |||||| |||| |||| ||||| |||||||||| Sbjct 1493313 TTTATGATACTATCCAATTTGTGCGACCAGATATCCATACAATATGCATAGGATTAGCTA 1493372 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||||| || ||||||||| ||||||| || ||||||||||| |||||||||| Sbjct 1493373 CTTCAATGGGACCTTTTATCCTGGCCGGAGGACAACTTACCAAACGTATAGCATTCCC 1493430 >seq299 Length=799419 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||| |||||||||| |||||| |||| | |||| |||| ||||| |||||||||| | Sbjct 710520 TTTATGGTACTATGCAATTTGTGCGACCATATATCCATACAATATGCATAGGATTAGCTG 710461 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||| ||||| ||||||||| ||||| | || ||||||||||| ||| |||||| Sbjct 710460 CTTCAATGAGATCTTTTATCCTGGCCGGAGAACAACTTACCAAACGTATAGTATTCCC 710403 >seq73 Length=2044786 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| || | |||| ||||| ||| |||| | Sbjct 936903 TTTATGATACTATGCAATTTGTGCGACCAGATATTCATACAATATGCATAGAATTAATTG 936844 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||| ||||||||| || ||||||||||| || ||||||| Sbjct 936843 CTTCAATGGGATCTTTTATCCTTGTCGGAGGACAACTTACCAAACGTATAACATTCCC 936786 >seq32 Length=2710826 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||||||| ||||| || | | ||| |||| ||||| | |||||||||| Sbjct 1754565 TTTATGATATTATGCAATTTGTGTGACAAAATGTCCATACAATATGCCTGGGATTAGCCG 1754506 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||||| |||| ||||| | ||||||||| || | ||||| ||||||||||||| Sbjct 1754505 CTTCAATGGAATCTTTTATCTTAGTCGGAGGATGAACTGCCAAATGTCTAGCATTCCC 1754448 >seq305 Length=776258 Score = 105 bits (116), Expect = 3e-19 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 ||||||||||||||| |||||| || ||| ||| | || ||||| | |||||||||||| Sbjct 187484 TATGATACTATGCAATTTGTGCGACTAGATGTCCATCCAATATGCATGGGATTAGCCGCT 187425 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAA 96 || ||||||||| ||||||| || ||||||||| Sbjct 187424 TCGATGGGATCTTTTATCCTAGTAGGAGGAGAA 187392 >seq36 Length=2601835 Score = 100 bits (110), Expect = 1e-17 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 43 GTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACC 102 |||||| | |||||||||||||||| ||||||| ||||| ||||| |||||||||||||| Sbjct 1054815 GTATGCATCGGATTAGCCGCTTCAACGGGATCTTTTATCATGGTCAGAGGAGAAATTACC 1054756 Query 103 AAACGTCTAG 112 |||||||||| Sbjct 1054755 AAACGTCTAG 1054746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19043305614720