Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq867 98.7 6e-17 seq443 98.7 6e-17 seq80 98.7 6e-17 seq693 96.9 2e-16 seq44 96.9 2e-16 seq150 95.1 7e-16 seq115 95.1 7e-16 seq60 95.1 7e-16 seq1 80.6 2e-11 >seq867 Length=66654 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31818 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 31877 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 31878 GTATTAGCTCT 31888 Score = 78.8 bits (86), Expect = 5e-11 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 8900 |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 21878 ACCTTTTATCTAATAAATGCATCCCTTCCATAAGTCGGGGTTTGTT 21923 Score = 78.8 bits (86), Expect = 5e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 8900 || || || |||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 62579 GCCCGCGTCGACCTTTTATCTAATAAATGTATCCCTTCCATAAGTCGGGGTTTGTT 62634 >seq443 Length=467088 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224044 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 223985 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 223984 GTATTAGCTCT 223974 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252209 GCTCGCATCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 252150 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 252149 GTATTAGCTCT 252139 Score = 93.3 bits (102), Expect = 2e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 ||||| || ||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 337047 GCTCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCATAAGTTGGGGTTTGTTGCAC 336988 Query 8905 GATT 8908 | || Sbjct 336987 GTTT 336984 Score = 93.3 bits (102), Expect = 2e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || |||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 346709 GCCCGCGTTGACCTTTTATCTAATAAATGCATCCCTTCCATAAGTTGGGGTTTGTTGCAC 346650 Query 8905 G 8905 | Sbjct 346649 G 346649 Score = 87.8 bits (96), Expect = 1e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 163989 GCCCGCGTCGACCTTTTATTTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCAC 163930 Query 8905 G 8905 | Sbjct 163929 G 163929 Score = 84.2 bits (92), Expect = 1e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||| ||||||||||||||| |||| |||||||||||||| Sbjct 315685 GCCCGCGTCGACCTTTTATCTAATTAATGCATCCCTTCCATAAGTTGGGGTTTGTTGCAC 315626 Query 8905 G 8905 | Sbjct 315625 G 315625 Score = 78.8 bits (86), Expect = 5e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 8900 || || || || ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 312911 GCCCGCGTCGAACTTTTATCTTATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 312856 >seq80 Length=1937898 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1508136 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 1508077 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1508076 GTATTAGCTCT 1508066 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516347 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 1516288 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 1516287 GTATTAGCTCT 1516277 >seq693 Length=185508 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90086 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 90145 Query 8905 G 8905 | Sbjct 90146 G 90146 Score = 96.9 bits (106), Expect = 2e-16 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109099 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 109158 Query 8905 G 8905 | Sbjct 109159 G 109159 Score = 89.7 bits (98), Expect = 3e-14 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 127989 GACCTTTTATCTAATAAATGCATCCATTCCAGAAGTCGGGGTTTGTTGCACG 128040 Score = 87.8 bits (96), Expect = 1e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 74821 GCCCGCGTCGACCTTTTCTCTAATAAATGCATCCCTTCTAGAAGTCGGGGTTTGTTGCAC 74880 Query 8905 G 8905 | Sbjct 74881 G 74881 Score = 78.8 bits (86), Expect = 5e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 8900 || || || ||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 6830 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCATAAGTTGGGGTTTGTT 6885 Score = 78.8 bits (86), Expect = 5e-11 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 8900 || || ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 21110 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCAATAAGTCGGGGTTTGTT 21162 Score = 78.8 bits (86), Expect = 5e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || | |||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 35398 GCCCGCGTCGGCCTTTTATCTAATAAATGCATCCCTTATAGAAGTCGGGGTTTGTTACAC 35457 Query 8905 G 8905 | Sbjct 35458 G 35458 >seq44 Length=2434495 Score = 96.9 bits (106), Expect = 2e-16 Identities = 60/62 (97%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 8854 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCT 8911 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1539748 GACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 1539689 Query 8912 CT 8913 || Sbjct 1539688 CT 1539687 >seq150 Length=1428744 Score = 95.1 bits (104), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 2/71 (3%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522758 GCCCGCGTCGATCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 522817 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 522818 GTATTAGCTCT 522828 >seq115 Length=1638671 Score = 95.1 bits (104), Expect = 7e-16 Identities = 62/66 (94%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT 8908 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1471578 TGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTTTTGCACGTATT 1471519 Query 8909 -GCTCT 8913 ||||| Sbjct 1471518 AGCTCT 1471513 >seq60 Length=2177853 Score = 95.1 bits (104), Expect = 7e-16 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953974 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 953915 >seq1 Length=7090834 Score = 80.6 bits (88), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 8855 ACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTC 8912 ||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||| |||| Sbjct 4860983 ACCTTTTATCTTATAAATGCATCCCTTCCAGAAGTTGAGGTTTGTTGCACGTATTAGCTC 4861042 Query 8913 T 8913 | Sbjct 4861043 T 4861043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28401653077512