Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tarenaya_20hassleriana_20[refseq_20GCF_5F000463585.1_202013-09-05] 12,249 sequences; 249,929,577 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq11647 98.7 6e-17 seq10900 98.7 6e-17 seq8580 98.7 6e-17 seq7902 98.7 6e-17 seq7313 98.7 6e-17 seq6689 98.7 6e-17 seq5683 98.7 6e-17 seq5285 98.7 6e-17 seq5188 98.7 6e-17 seq5119 98.7 6e-17 seq5150 93.3 2e-15 seq7033 91.5 8e-15 seq2129 89.7 3e-14 >seq11647 Length=9435 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1191 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 1250 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 1251 TTAGCTCT 1258 >seq10900 Length=2185 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 358 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 417 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 418 TTAGCTCT 425 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1169 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 1228 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 1229 TTAGCTCT 1236 >seq8580 Length=25508 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 12483 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 12424 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 12423 TTAGCTCT 12416 >seq7902 Length=42133 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1241 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 1182 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 1181 TTAGCTCT 1174 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2292 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 2351 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 2352 TTAGCTCT 2359 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 21801 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 21742 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 21741 TTAGCTCT 21734 >seq7313 Length=56266 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 9484 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 9543 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 9544 TTAGCTCT 9551 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 49289 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 49348 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 49349 TTAGCTCT 49356 >seq6689 Length=82222 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 21714 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 21655 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 21654 TTAGCTCT 21647 >seq5683 Length=2377369 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 12813 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 12872 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 12873 TTAGCTCT 12880 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 58904 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 58963 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 58964 TTAGCTCT 58971 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 70472 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 70531 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 70532 TTAGCTCT 70539 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 95456 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 95515 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 95516 TTAGCTCT 95523 >seq5285 Length=1311 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 273 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 332 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 333 TTAGCTCT 340 >seq5188 Length=196913 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 13347 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 13406 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 13407 TTAGCTCT 13414 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 15927 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 15986 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 15987 TTAGCTCT 15994 Score = 91.5 bits (100), Expect = 8e-15 Identities = 64/69 (93%), Gaps = 3/69 (4%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTC-GGGGTTTGTTGCACG- 8905 || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 10766 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGGTTTGTTGCACGT 10825 Query 8906 ATT-GCTCT 8913 ||| ||||| Sbjct 10826 ATTAGCTCT 10834 >seq5119 Length=206144 Score = 98.7 bits (108), Expect = 6e-17 Identities = 64/68 (94%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-A 8906 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 6770 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 6829 Query 8907 TT-GCTCT 8913 || ||||| Sbjct 6830 TTAGCTCT 6837 >seq5150 Length=199752 Score = 93.3 bits (102), Expect = 2e-15 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184169 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 184114 Score = 87.8 bits (96), Expect = 1e-13 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 166415 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCA 166363 Score = 87.8 bits (96), Expect = 1e-13 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCA 8903 || ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 166615 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTGTTGCA 166563 >seq7033 Length=930220 Score = 91.5 bits (100), Expect = 8e-15 Identities = 64/69 (93%), Gaps = 3/69 (4%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTC-GGGGTTTGTTGCACG- 8905 || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 304116 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGGTTTGTTGCACGT 304175 Query 8906 ATT-GCTCT 8913 ||| ||||| Sbjct 304176 ATTAGCTCT 304184 >seq2129 Length=4639 Score = 89.7 bits (98), Expect = 3e-14 Identities = 56/58 (97%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 8858 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1468 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28402485562572