Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq1061 123 9e-25 seq161 118 4e-23 >seq1061 Length=125232 Score = 123 bits (136), Expect = 9e-25 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | || ||||| | || || |||| Sbjct 113215 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACGATATGCATGGGGTTGGCCG 113156 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct 113155 CTTCAATAGCATCATTTATCCTAGTCGGAGGAGAAATTACCAAACGTATAGCATTCCC 113098 >seq161 Length=278270 Score = 118 bits (130), Expect = 4e-23 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | ||| ||||| | || || |||| Sbjct 159769 TTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGGTTGGCCG 159710 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||||||| | ||| |||| || |||||||||| ||||||||||||| |||||||||| Sbjct 159709 CTTCAATAGCATCCTTTATACTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCC 159652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19044990090240