Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thlaspi_20arvense_20[genbank_20GCA_5F000956625.1_202015-03-19] 6,768 sequences; 343,012,389 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq298 98.7 6e-17 seq1579 95.1 7e-16 seq2278 91.5 8e-15 >seq298 Length=195704 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125145 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 125086 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 125085 GTATTAGCTCT 125075 Score = 89.7 bits (98), Expect = 3e-14 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || || |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 134946 GCCCGCGTCGAACTTTTATCTAATAAATGCATTCCTTCCAGAAGTCGGGGTTTGTTGCAC 134887 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 134886 GTATTAGCTCT 134876 >seq1579 Length=77404 Score = 95.1 bits (104), Expect = 7e-16 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 8849 GTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3398 GTGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGGTTTGTTGCACG 3342 >seq2278 Length=30574 Score = 91.5 bits (100), Expect = 8e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 8848 CGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG 8905 || || |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 23603 CGCGTCGACCTTTTATCTAATAAATGCATCCCTTTCAGAAGTCGGGGTTTGTTGCACG 23660 Score = 86.0 bits (94), Expect = 4e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 26847 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAAAAGTCGGGGTTTATTGCAC 26906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28404237136704