Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq38620 113 2e-21 seq4 78.8 4e-11 >seq38620 Length=362213 Score = 113 bits (124), Expect = 2e-21 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||||||||||| |||| | ||||| | |||| ||||| |||||||||||||||| Sbjct 87079 TGATACTATGCAATTTGTAGAAGCAGAAGTATATACAATATGCATAGGATTAGCCGCTTC 87020 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCT 110 ||||| |||| |||| || |||| |||||||||||||||||||| Sbjct 87019 AATGGCATCTCTTATTTTGTTCGGGGGAGAAATTACCAAACGTCT 86975 >seq4 Length=28907061 Score = 78.8 bits (86), Expect = 4e-11 Identities = 81/107 (76%), Gaps = 7/107 (7%) Strand=Plus/Plus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG---- 61 ||||||||||||| |||| | ||||| | | | |||||||||||||||||||| Sbjct 22355413 TGATACTATGCAATTTGTAGAAGCAGAAGTACAAATAGTATGCGTAGGATTAGCCGCATC 22355472 Query 62 ---CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAA 105 |||||||| |||| || | || | || ||||||||||||||| Sbjct 22355473 AAACTTCAATGACATCTCTTCTTTTGCTAGGGGGAGAAATTACCAAA 22355519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19038264895680