Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq2507 105 3e-19 seq1206 84.2 8e-13 >seq2507 Length=24556 Score = 105 bits (116), Expect = 3e-19 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 6 TGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTC 65 ||||||||||||| |||| | | ||| | | ||||||||||||||| |||||| ||| Sbjct 24113 TGATACTATGCAATTTGTAAAAGCCGAAGTACAGACAGTATGCGTAGGAATAGCCGTTTC 24054 Query 66 AATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||||| ||| || | || | || |||||||||||||||||||||||||| Sbjct 24053 AATGGCATCCCTTCTTTTGCTAGGGGGAGAAATTACCAAACGTCTAGCATT 24003 >seq1206 Length=122864 Score = 84.2 bits (92), Expect = 8e-13 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 8 ATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCTTCAA 67 ||||| ||||| |||| | ||| | | | ||||||| | |||||||||||| |||||| Sbjct 62383 ATACTGTGCAATTTGTAAAAGCAGGAGTACATACAGTACGGGTAGGATTAGCCACTTCAA 62324 Query 68 TGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 ||| |||| || | || | | | | ||||||||||||||||||||| Sbjct 62323 TGGCATCTCTTCTTTTGCTACGGGAAAGAATTACCAAACGTCTAGCATT 62275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19040687032320