Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq989 87.8 1e-13 seq1158 84.2 1e-12 >seq989 Length=278829 Score = 87.8 bits (96), Expect = 1e-13 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 171405 GTCGACCTTTTATCTAATAAATGCGTCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 171464 Query 8909 GCTCT 8913 ||||| Sbjct 171465 GCTCT 171469 >seq1158 Length=130926 Score = 84.2 bits (92), Expect = 1e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 110036 GTCGACCTTTTATCTAATAAATGTGTCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTA 109977 Query 8909 GCTCT 8913 ||||| Sbjct 109976 GCTCT 109972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28397636057472