Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq194866 98.7 6e-17 seq58801 98.7 6e-17 seq42697 80.6 2e-11 >seq194866 Length=11293 Score = 98.7 bits (108), Expect = 6e-17 Identities = 63/66 (95%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 8850 TGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT 8908 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4636 TGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 4577 Query 8909 -GCTCT 8913 ||||| Sbjct 4576 AGCTCT 4571 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4862 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 4803 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 4802 GTATTAGCTCT 4792 >seq58801 Length=467 Score = 98.7 bits (108), Expect = 6e-17 Identities = 66/71 (93%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8845 GCTCGTGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 || || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 GCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 401 Query 8905 G-ATT-GCTCT 8913 | ||| ||||| Sbjct 400 GTATTAGCTCT 390 >seq42697 Length=340 Score = 80.6 bits (88), Expect = 2e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCAC 8904 |||||||||||||||||||||||||| | ||| |||||||||| |||||||||| Sbjct 225 GTTGACCTTTTATCTAATAAATGCATTCATTCTAGAAGTCGGGATTTGTTGCAC 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28342420726884