Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_002039.1 Length=2947 Score E Sequences producing significant alignments: (Bits) Value seq110 123 5e-25 >seq110 Length=811921 Score = 123 bits (136), Expect = 5e-25 Identities = 254/375 (68%), Gaps = 7/375 (2%) Strand=Plus/Minus Query 1920 TTCACTTCACTTTTTAACATGGAAGCAAAGAACATGGAcccccccACTCCTTACATATGT 1979 ||||| | || |||||||||||||| ||| ||||| || | || || || ||| Sbjct 253830 TTCACAACTCTCTTTAACATGGAAGCCAAGGTGATGGAACCTGCAGTGCCATATATTTGT 253771 Query 1980 TCAAAGTTTCTATTAACGGATGAGTTGGGTAATACATTCTCCGTCCCCGATCCTTTACGC 2039 || ||||| || | | || ||||| ||||||||||| ||||| || ||||| || || Sbjct 253770 TCGAAGTTCTTACTCTCTGACGAGTTCGGTAATACATTTTCCGTTCCAGATCCATTGCGT 253711 Query 2040 GAGCTGCAGCGTTTAGGAACGAAGAAGATCCCTGATGGGGGTCTTGACGAATCCTACCTA 2099 ||| | ||||| |||||||| ||||| || || || | ||| |||| || | Sbjct 253710 GAGGTTCAGCGGTTAGGAACAAAGAAAATTCCCTATTCTGACAATGATGAATTCT---TG 253654 Query 2100 AAAGCCCATTTCATGAGTTTTGTTGACCGCCTGAAGTTCTTACCCAGAATGACTCACTAT 2159 || || ||||||||||||||||| || |||| || ||| | ||||| |||| | Sbjct 253653 TTTGCTCACTTCATGAGTTTTGTTGATCGATTGAAATTTTTAGACCGAATGTCTCAGTCG 253594 Query 2160 ACTGTGGCGCAACTAACGACCTTCTATGAAATGAAGTATAAGAAATCTGGTGCTGAGTGT 2219 | | | ||||| | |||| ||| |||| || ||||| ||||| | ||| | Sbjct 253593 TGTATCGATCAACTTTCTCTTTTCTTTGAGTTGAAATACAAGAAGTCTGGGGAAGAGGCT 253534 Query 2220 CATGCTATGCTCGAGGGATTCGCGAAGTATTCCACTAACTTTTCCATT--TACAAGGAGC 2277 | ||| | | | || ||| ||| || |||| |||||| | ||||| || | Sbjct 253533 GCTTTAATGTTAGGAGCCTTTAAGAAATATACCGCTAA--TTTCCAGTCCTACAAAGAAC 253476 Query 2278 TTTATATTTCTGATC 2292 ||||| ||| |||| Sbjct 253475 TTTATTATTCAGATC 253461 Score = 120 bits (132), Expect = 6e-24 Identities = 201/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 1920 TTCACTTCACTTTTTAACATGGAAGCAAAGAACATGGAcccccccACTCCTTACATATGT 1979 ||||| | || |||||||||||||| ||| ||||| || | || || || ||| Sbjct 254552 TTCACAACTCTCTTTAACATGGAAGCCAAGGTGATGGAACCTGCAGTGCCATATATTTGT 254611 Query 1980 TCAAAGTTTCTATTAACGGATGAGTTGGGTAATACATTCTCCGTCCCCGATCCTTTACGC 2039 || ||||| || | | || ||||| ||||||||||| ||||| || ||||| || || Sbjct 254612 TCGAAGTTCTTACTCTCTGACGAGTTCGGTAATACATTTTCCGTTCCAGATCCATTGCGT 254671 Query 2040 GAGCTGCAGCGTTTAGGAACGAAGAAGATCCCTGATGGGGGTCTTGACGAATCCTACCTA 2099 ||| | ||||| |||||||| ||||| || || || | ||| |||| || | Sbjct 254672 GAGGTTCAGCGGTTAGGAACAAAGAAAATTCCCTATTCTGACAATGATGAATTCT---TG 254728 Query 2100 AAAGCCCATTTCATGAGTTTTGTTGACCGCCTGAAGTTCTTACCCAGAATGACTCACTAT 2159 || || ||||||||||||||||| || |||| || ||| | ||||| |||| | Sbjct 254729 TTTGCTCACTTCATGAGTTTTGTTGATCGATTGAAATTTTTAGACCGAATGTCTCAGTCG 254788 Query 2160 ACTGTGGCGCAACTAACGACCTTCTATGAAATGAAGTATAAGAAATCTGG 2209 | | | ||||| | |||| ||| |||| || ||||| ||||| Sbjct 254789 TGTATCGATCAACTTTCTCTTTTCTTTGAGTTGAAATACAAGAAGTCTGG 254838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9314590740000