Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_002041.1 Length=7099 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 1e-12 seq9 78.8 4e-11 seq8 78.8 4e-11 >seq10 Length=40424437 Score = 84.2 bits (92), Expect = 1e-12 Identities = 237/357 (66%), Gaps = 9/357 (3%) Strand=Plus/Plus Query 3731 GGACGCACAGTACTTGACGTTTACACAATCTGAGAAAGCCGATCTGTACAAAGCGTTGCG 3790 || ||| || || ||||| ||||| ||| |||| |||| || | | ||| ||| | Sbjct 20600313 GGGCGCTCATTATTTGACCTTTACTCAAGCTGAAAAAGATGAAGTTCAAAAATATTTGGG 20600372 Query 3791 TGCGAAAGGACCTGTGGAGGTGAACACTGTGCATGAGACACAAGGAAAAACTTTTGACGA 3850 | | | | || |||| |||| ||| | ||||| | |||||||| || | || | Sbjct 20600373 ATCTAGAAAA--TGGGGAG-TGAATACTATCCATGAAAGTCAAGGAAAGACCTACGATAA 20600429 Query 3851 CGTTATCGTTGTTAGACTGAAGACCACTGAGAATGAAATTTATCCGGGTGGAAGGAAGGG 3910 || || | ||| || |||| | |||||||||||||| ||||| ||||| || || Sbjct 20600430 TGTAATACTGGTTCGATTGAAAGCTACTGAGAATGAAATATATCCTGGTGGTAGAAAATC 20600489 Query 3911 ACAACCTTACGAGATTGTGGCAACCACCAGGCACAGGAGGTCTTTGGTTTACTACACTGC 3970 | ||||| |||||| || || || ||||| ||||||||| | || ||||| Sbjct 20600490 TAACCCTTATATTGTTGTGGGTACTACAAGACACAGAAGGTCTTTGATATATTACACAAA 20600549 Query 3971 TATTGAGGACAGGTTATTCGAAGATATCAGCGACATGCAGGATGT-CATGGAGAGTAAAT 4029 |||||| | | | | || ||| || ||| | ||| || | ||| |||| Sbjct 20600550 AGCTGAGGATAAACTTTACAGTGACATCTCTGATATGATGCTTGTGCAGGAAGA-AAAAT 20600608 Query 4030 TGATGAAGAACCTCTGTTC--TGAGCTTACTAAATGACGGTTTGGGTCGAAGTATGA 4084 |||||| ||| | || | || | | ||||||||||||||||| ||||| || Sbjct 20600609 TGATGA--AACATTTGCACGACGAAGGTTCCAAATGACGGTTTGGGTCAAAGTACGA 20600663 >seq9 Length=31747250 Score = 78.8 bits (86), Expect = 4e-11 Identities = 124/175 (71%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 3324 AAAAGGATCAGGACTGTTGACTCTTTCTTGATGCATGACTATGACAAATTCCGTGCTGCT 3383 || ||| | || ||||| ||||||||||| || |||| | | || | | |||| | Sbjct 957039 AAGAGGGTTAGAACTGTAGACTCTTTCTTTCTGAATGATTCT---AAGTCGAGAGCTGGT 956983 Query 3384 ACCGTACATTTTGACGAAGCGTTGATGGCACACGCAGGAATTGTGTACTTCTGTGCTGAC 3443 | |||||||| || ||||||||||| || || || || || ||||| || || ||| Sbjct 956982 GTACTGCATTTTGATGAGGCGTTGATGGCTCATGCTGGTATGGTATACTTTTGCGCAGAC 956923 Query 3444 A--TTCTTGGGGCGAAGAAAGTGATTTGCCAAGGAGATTCACAACAAATACCTTT 3496 | || | | ||| | ||||||||||| || || ||||||||||| || || Sbjct 956922 ATGTTGTCTGCTCGA--ATTGTGATTTGCCAGGGTGACTCACAACAAATTCCCTT 956870 >seq8 Length=30791815 Score = 78.8 bits (86), Expect = 4e-11 Identities = 145/211 (69%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 3312 GAGTCAGATTTGAAAAGGATCAGGACTGTTGACTCTTTCTTGATGCATGACTATGACAAA 3371 ||| || | ||||| || |||| ||||| ||||||||||| || ||| ||| | | Sbjct 24366132 GAGGCACAGTTGAAGAGAGTCAGAACTGTCGACTCTTTCTTTTTGAATG---ATGGAAGA 24366076 Query 3372 TTCCGTGCTGCTACCG---TACATTTTGACGAAGCGTTGATGGCACACGCAGGAATTGTG 3428 | || |||| || |||||||||| ||||| ||||| || |||||||| || Sbjct 24366075 TCACG---CGCTAACGTTTTACATTTTGATGAAGCTCCGATGGTTCATGCAGGAATGGTT 24366019 Query 3429 TACTTCTGTGCTGACATTCTTGGGGCGAAGAAAGTGATTTGCCAAGGAGATTCACAACAA 3488 || || |||| |||||| | || | || | || || |||||||| |||||| Sbjct 24366018 TATTTTTGTGTTGACATGTTATCTGCTCGCATTGTAGTGTGTCAGGGAGATTCTCAACAA 24365959 Query 3489 ATACCTTTCATAAATCGTGTTGAGTCAATTA 3519 || ||||| | ||| | ||||| | |||| Sbjct 24365958 ATTCCTTTTGTGAATAGAGTTGAAGCTATTA 24365928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22592096733500