Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_002359.1 Length=7147 Score E Sequences producing significant alignments: (Bits) Value seq37044 96.9 2e-16 seq8 84.2 1e-12 seq9 78.8 4e-11 >seq37044 Length=2975 Score = 96.9 bits (106), Expect = 2e-16 Identities = 231/342 (68%), Gaps = 17/342 (5%) Strand=Plus/Minus Query 3253 GTATTACATTGAGAGATGGAGTTCCCGGTTGCGGAAAATCTACGTGGATTCTGAACAATG 3312 || ||||||||| |||||| || || ||||| || ||||| || ||| | || | | Sbjct 470 GTGTTACATTGATAGATGGTGTGCCGGGTTGTGGTAAATCAACACATATTGTCAAGGAAG 411 Query 3313 CAAATCCC-ACAAAAGATATGATTCTATCGGTGGGAAAAGAGGCAACTGAGGATTTAAAA 3371 || | ||| | |||| | || | |||| |||||||| | ||||| ||| Sbjct 410 CATCTTTAGACAGACAGTATG-TGCTCACAATGGGTAAAGAGGCTGCGTTAGATTTGAAA 352 Query 3372 GAGAAATTCATGAAAAAACACAGGTGTGTAGAATCCGACTTGAAGAGGATAAGAACTGTG 3431 | | ||| | ||| ||| || ||| || | | || || | ||||||||| Sbjct 351 GCAAGATTTAAAAAAGAACGCAAAGCAACTGAAACCCAACTAAAAAGAGTTAGAACTGTG 292 Query 3432 GATTCATTTCTTATGCACGATTATGACAAGTACAGGGCAGCAACCGTGC---ACTTTGAT 3488 || || || || || | ||| || |||| || ||| | ||||| |||||||| Sbjct 291 GACTCGTTCTTTTTGAATGATAAT---AAGTCGAG---AGCTAGCGTGCTACACTTTGAT 238 Query 3489 GAAGCACTTATGGCGCACGCTGGTATGGTGTATTTTTGTGCTGATATACTTG---GAGCT 3545 || || | ||||| |||||||||||||| |||||||| || ||||| ||| | || Sbjct 237 GAGGCGTTGATGGCTCACGCTGGTATGGTCTATTTTTGCGCGGATAT-GTTGTCTGCGCG 179 Query 3546 AAGAAGGTCATTTGTCAGGGTGATTCTCAACAAATACCTTTT 3587 ||| || || ||||||||||| || |||||||| || ||| Sbjct 178 AAG--TGTGATCTGTCAGGGTGACTCGCAACAAATCCCCTTT 139 >seq8 Length=30791815 Score = 84.2 bits (92), Expect = 1e-12 Identities = 185/271 (68%), Gaps = 15/271 (6%) Strand=Plus/Minus Query 3343 TGGGAAAAGAGGCAACTGAGGATTTAAAAGAGAAATTCATGAAAAAACACAGGTGTG--- 3399 |||||||||| ||||| ||| | ||||||| ||| | ||| | | ||| | Sbjct 24366191 TGGGAAAAGAAGCAACAATGGACCTTAAAGAGAGATTTA---AAAGAGAAAGGAAAGCGA 24366135 Query 3400 TAGAATCCGACTTGAAGAGGATAAGAACTGTGGATTCATTTCTTATGCACGATTATGACA 3459 | || | | |||||||| | |||||||| || || |||||| | | || ||| | Sbjct 24366134 TTGAGGCACAGTTGAAGAGAGTCAGAACTGTCGACTC-TTTCTTTTTGA--ATGATGG-A 24366079 Query 3460 AGTACAGGGCAGCAACCGTG---CACTTTGATGAAGCACTTATGGCGCACGCTGGTATGG 3516 || || | || | ||| || ||||||||||| | |||| || || || |||| Sbjct 24366078 AGATCACGC--GCTAACGTTTTACATTTTGATGAAGCTCCGATGGTTCATGCAGGAATGG 24366021 Query 3517 TGTATTTTTGTGCTGATATACTTGGAGCTAAGAAGGTCATTTGTCAGGGTGATTCTCAAC 3576 | |||||||||| ||| || | ||| | || | |||||||| |||||||||| Sbjct 24366020 TTTATTTTTGTGTTGACATGTTATCTGCTCGCATTGTAGTGTGTCAGGGAGATTCTCAAC 24365961 Query 3577 AAATACCTTTTATTAATCGCGTTGAATCTAT 3607 |||| |||||| | ||| | |||||| |||| Sbjct 24365960 AAATTCCTTTTGTGAATAGAGTTGAAGCTAT 24365930 >seq9 Length=31747250 Score = 78.8 bits (86), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 3409 ACTTGAAGAGGATAAGAACTGTGGATTCATTTCTTATGCACGATTATGACAAGTACAGGG 3468 |||| |||||| | |||||||| || || || || || | |||| | |||| || | Sbjct 957043 ACTT-AAGAGGGTTAGAACTGTAGACTCTTTCTTTCTGAATGATTCT---AAGTCGAGAG 956988 Query 3469 CAGCAACCGTGCACTTTGATGAAGCACTTATGGCGCACGCTGGTATGGTGTATTTTTGTG 3528 | | |||| |||||||| || | ||||| || ||||||||||| || ||||| | Sbjct 956987 CTGGTGTACTGCATTTTGATGAGGCGTTGATGGCTCATGCTGGTATGGTATACTTTTGCG 956928 Query 3529 CTGATATACTTGGAGCTAAGAAGGTCATTTGTCAGGGTGATTCTCAACAAATACCTTTTA 3588 | || || | ||| | || ||||| |||||||| || |||||||| || ||| Sbjct 956927 CAGACATGTTGTCTGCTCGAATTGTGATTTGCCAGGGTGACTCACAACAAATTCCCTTTG 956868 Query 3589 TTAATCGCGTTGAA 3602 | ||| | || ||| Sbjct 956867 TGAATAGGGTAGAA 956854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22745632149500