Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_003838.1 Length=3074 Score E Sequences producing significant alignments: (Bits) Value seq110 259 9e-66 >seq110 Length=811921 Score = 259 bits (286), Expect = 9e-66 Identities = 357/495 (72%), Gaps = 6/495 (1%) Strand=Plus/Minus Query 1886 GTTACGACACCTCTCAATTTGACAAATTGATTTTCTCTGGTGATGACTCACTGGGATTCT 1945 ||||||| ||| ||||| || || | | ||||| || ||||| || || ||||| | Sbjct 253922 GTTACGATACCGACCAATTCGAAAAGCTTTTATTCTCAGGCGATGATTCTCTAGGATTTT 253863 Query 1946 CAATAAAGGCGCCAGTTGGTGATCCAAGCTTGTTCACCTCTCTTTTTAACATGGAAGCCA 2005 || | | || ||||||||||| || ||||| |||| |||||||||||||||| Sbjct 253862 CAGTGCTTCCCCCTGTTGGTGATCCGAGTAAATTCACAACTCTCTTTAACATGGAAGCCA 253803 Query 2006 AAGTTATGGAGCCCTCCGTCCCGTATATATGCTCCAAGTTTTTACTCACAGACGATTTCG 2065 | || ||||| || | || || ||||| || || ||||| |||||| | ||||| |||| Sbjct 253802 AGGTGATGGAACCTGCAGTGCCATATATTTGTTCGAAGTTCTTACTCTCTGACGAGTTCG 253743 Query 2066 GTAACACCTTTTCAGTCCCGGATCCCTTGCGTGAGATCCAAAGGTTAGGTTCTAAGAAAA 2125 |||| || ||||| || || ||||| ||||||||| | || ||||||| | ||||||| Sbjct 253742 GTAATACATTTTCCGTTCCAGATCCATTGCGTGAGGTTCAGCGGTTAGGAACAAAGAAAA 253683 Query 2126 T-CCCTCTTGATGAGGATGATCGATCTCTACATGCTCATTTTATGAGTTTTGTTGATAGA 2184 | |||| || ||| ||||| || | |||||| || ||||||||||||||| || Sbjct 253682 TTCCCTATTC-TGACAATGATGAATTCTTGTTTGCTCACTTCATGAGTTTTGTTGATCGA 253624 Query 2185 TTGAAATTCTTAAATCATATGAACCAGACCTCTATGACTCAATTATCTCTCTTTTACGAG 2244 |||||||| ||| | | ||| ||| | | ||| |||| | ||||| || | ||| Sbjct 253623 TTGAAATTTTTAGACCGAATGTCTCAGTCGTGTATCGATCAACTTTCTCTTTTCTTTGAG 253564 Query 2245 ATGAAATACCGAAAGTCTGGTGACGA--TATCTTACTAGTGCTTGGTGCATTTAATAAGT 2302 |||||||| |||||||| || || ||| || || | || || ||||| || | Sbjct 253563 TTGAAATACAAGAAGTCTGGGGAAGAGGCTGCTT--TAATGTTAGGAGCCTTTAAGAAAT 253506 Query 2303 ACACGGCCAACTTTAACGCCTATAAAGAGTTGTATTATTCTGAAAAGCAGCAGTGCGCAT 2362 | || || || || | |||| ||||| | |||||||| || | ||||||| || Sbjct 253505 ATACCGCTAATTTCCAGTCCTACAAAGAACTTTATTATTCAGATCGTCGTCAGTGCGAAT 253446 Query 2363 TGATCAATTCGTTTT 2377 ||||||||||||||| Sbjct 253445 TGATCAATTCGTTTT 253431 Score = 226 bits (250), Expect = 6e-56 Identities = 285/389 (73%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 1883 GGTGTTACGACACCTCTCAATTTGACAAATTGATTTTCTCTGGTGATGACTCACTGGGAT 1942 |||||||||| ||| ||||| || || | | ||||| || ||||| || || |||| Sbjct 254457 GGTGTTACGATACCGACCAATTCGAAAAGCTTTTATTCTCAGGCGATGATTCTCTAGGAT 254516 Query 1943 TCTCAATAAAGGCGCCAGTTGGTGATCCAAGCTTGTTCACCTCTCTTTTTAACATGGAAG 2002 | ||| | | || ||||||||||| || ||||| |||| ||||||||||||| Sbjct 254517 TTTCAGTGCTTCCCCCTGTTGGTGATCCGAGTAAATTCACAACTCTCTTTAACATGGAAG 254576 Query 2003 CCAAAGTTATGGAGCCCTCCGTCCCGTATATATGCTCCAAGTTTTTACTCACAGACGATT 2062 |||| || ||||| || | || || ||||| || || ||||| |||||| | ||||| | Sbjct 254577 CCAAGGTGATGGAACCTGCAGTGCCATATATTTGTTCGAAGTTCTTACTCTCTGACGAGT 254636 Query 2063 TCGGTAACACCTTTTCAGTCCCGGATCCCTTGCGTGAGATCCAAAGGTTAGGTTCTAAGA 2122 ||||||| || ||||| || || ||||| ||||||||| | || ||||||| | |||| Sbjct 254637 TCGGTAATACATTTTCCGTTCCAGATCCATTGCGTGAGGTTCAGCGGTTAGGAACAAAGA 254696 Query 2123 AAA-TCCCTCTTGATGAGGATGATCGATCTCTACATGCTCATTTTATGAGTTTTGTTGAT 2181 ||| ||||| || ||| ||||| || | |||||| || ||||||||||||||| Sbjct 254697 AAATTCCCTATT-CTGACAATGATGAATTCTTGTTTGCTCACTTCATGAGTTTTGTTGAT 254755 Query 2182 AGATTGAAATTCTTAAATCATATGAACCAGACCTCTATGACTCAATTATCTCTCTTTTAC 2241 |||||||||| ||| | | ||| ||| | | ||| |||| | ||||| || | Sbjct 254756 CGATTGAAATTTTTAGACCGAATGTCTCAGTCGTGTATCGATCAACTTTCTCTTTTCTTT 254815 Query 2242 GAGATGAAATACCGAAAGTCTGGTGACGA 2270 ||| |||||||| |||||||| || || Sbjct 254816 GAGTTGAAATACAAGAAGTCTGGGGAAGA 254844 Score = 120 bits (132), Expect = 6e-24 Identities = 263/392 (67%), Gaps = 9/392 (2%) Strand=Plus/Minus Query 1106 TAAAACCTGTGTTAAATACAGGTAGTGGACAGAAAAGAATCGGCACGACTAGAGAGGTCC 1165 ||| ||| || || ||||| || || || || || ||| | || || || | ||||||| Sbjct 254463 TAACACCGGTTTTGAATACCGGGAGCGGTCACAAGAGAGTAGGTACAACGAAGGAGGTCC 254404 Query 1166 TGTGCGCAATTAAGAAAAGAAACGCTGACGTGCCCGAATTGTGTGGCTCCGTTAATCTTA 1225 | |||||||||||| | || |||||||| || || | ||| ||||||||||| Sbjct 254403 TTACAGCAATTAAGAAACGTAATGCTGACGTTCCAGAGCTAGGTGATTCCGTTAATCTGT 254344 Query 1226 AGCGCCTTAGTGATGACGTTGCTGAGTGTTTTATGCTTAGTTTTATGAATGGCGATAAGT 1285 | | ||| | | || |||||| | ||| | || | ||| ||||| ||| | Sbjct 254343 CCAGGTTGAGTAAGGCTGTGGCTGAGAGATTTTTCATTTCGTATATCAATGG---TAACT 254287 Query 1286 ---TGTGTTCTAGTAATTTTATTAATATTGTGAGTGATTTTCATGCTTACATGAGTAAGT 1342 || || ||||||||| | ||| | || || | || || | ||||||| || | Sbjct 254286 CTCTGGCATCCAGTAATTTTGTCAATGTCGTTAGCAACTTCCACGATTACATGGAAAAAT 254227 Query 1343 GGCAGTCT---GTTCTCAGTTATGACGACTTACCCGATTTGAATGCTGAAAATCTCCAAT 1399 || ||||| | ||| |||||||| | || ||| | ||||||| ||| | || | Sbjct 254226 GGAAGTCTTCAGGTCTTTCGTATGACGATCTTCCAGATCTTCATGCTGAGAATTTGCAGT 254167 Query 1400 TTTACGAACACATGGTGAAGTCTGACGTGAAACCTTCCGTCACTGATACTTTGAATATCG 1459 |||| || |||||| | || ||||| ||||||||| || | || || | ||||| | Sbjct 254166 TTTATGATCACATGATAAAATCTGATGTGAAACCTGTTGTGAGCGACACACTCAATATTG 254107 Query 1460 ATCGCCCATTACCAGCCACCATCACATTTCAT 1491 | | || | ||||| || || || | |||| Sbjct 254106 ACAGACCGGTTCCAGCTACTATAACGTATCAT 254075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9720824608125