Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_012135.1 Length=2935 Score E Sequences producing significant alignments: (Bits) Value seq110 230 4e-57 >seq110 Length=811921 Score = 230 bits (254), Expect = 4e-57 Identities = 352/497 (71%), Gaps = 10/497 (2%) Strand=Plus/Minus Query 1886 GTTATGACACAGAACAATTTGATAGAATGCTGTTCTCGGGTGATGATTCACTCGCTTTCT 1945 |||| || || || ||||| || | | | ||||| || |||||||| || | || | Sbjct 253922 GTTACGATACCGACCAATTCGAAAAGCTTTTATTCTCAGGCGATGATTCTCTAGGATTTT 253863 Query 1946 CC-TCCATCGCTCCCGTCGGTGACCCTTCGAAGTTCACCACTCTATTCAACATGGAAGCG 2004 | | | || | || || ||||| || || ||||| ||||| || ||||||||||| Sbjct 253862 CAGTGCTTCCC-CCTGTTGGTGATCCGAGTAAATTCACAACTCTCTTTAACATGGAAGCC 253804 Query 2005 AAAGTCATGGAACCATCTGTTCCGTATATATGTTCCAAGTTCTTGTTGACTGATGAATTC 2064 || || |||||||| | || || ||||| ||||| |||||||| | |||| || ||| Sbjct 253803 AAGGTGATGGAACCTGCAGTGCCATATATTTGTTCGAAGTTCTTACTCTCTGACGAGTTC 253744 Query 2065 GGTCAGACCTTTTCCGTTCCAGACCCTTTAAGGGAGATACAACGTTTGGGCTCCAAGAAA 2124 ||| | || |||||||||||||| || || | ||| | || || || || | |||||| Sbjct 253743 GGTAATACATTTTCCGTTCCAGATCCATTGCGTGAGGTTCAGCGGTTAGGAACAAAGAAA 253684 Query 2125 ATCCCATATTCTG---ATGACG-ACTCTTTTCTACACGCTCATTTCATGAGTTTCGTAGA 2180 || || ||||||| |||| | | |||| | | ||||| ||||||||||| || || Sbjct 253683 ATTCCCTATTCTGACAATGATGAATTCTTGTTT----GCTCACTTCATGAGTTTTGTTGA 253628 Query 2181 TAGGCTGAAGTTTCTAGAACGCATGTCACAATTCACCATAGATCAACTGACGTTGTTCTA 2240 | | |||| ||| |||| || ||||| || | || |||||||| | | |||| Sbjct 253627 TCGATTGAAATTTTTAGACCGAATGTCTCAGTCGTGTATCGATCAACTTTCTCTTTTCTT 253568 Query 2241 TGAGATGAAATACAAAAAGAGCGGAGCTGATGCATCGCTCGTTCTAGGTGCATTTAAGAA 2300 |||| |||||||||| ||| || | || || | | | |||| || |||||||| Sbjct 253567 TGAGTTGAAATACAAGAAGTCTGGGGAAGAGGCTGCTTTAATGTTAGGAGCCTTTAAGAA 253508 Query 2301 GTATACCACGAACTTCAACGCCTATAAGGAGCTTTATTTCTCTGATCGTCATCAATGTGA 2360 |||||| | || ||| | |||| || || ||||||| || ||||||| ||| || || Sbjct 253507 ATATACCGCTAATTTCCAGTCCTACAAAGAACTTTATTATTCAGATCGTCGTCAGTGCGA 253448 Query 2361 CCTTATCAACTCGTTTT 2377 | ||||| ||||||| Sbjct 253447 ATTGATCAATTCGTTTT 253431 Score = 224 bits (248), Expect = 2e-55 Identities = 288/395 (73%), Gaps = 9/395 (2%) Strand=Plus/Minus Query 1120 AATACAGGCAGTGGGCATAAGCGCGTTGGGACTCAAAAAGAAGTCCACACAGCCATAAAG 1179 ||||| || || || || ||| | || || || || || |||| ||||| || ||| Sbjct 254449 AATACCGGGAGCGGTCACAAGAGAGTAGGTACAACGAAGGAGGTCCTTACAGCAATTAAG 254390 Query 1180 AAACGTAATGCAGACGTCCCAGAGCTCGGCGACTCCGTAAACCTCACCCGTCTCAGTGAA 1239 ||||||||||| ||||| |||||||| || || ||||| || || || | | ||| | Sbjct 254389 AAACGTAATGCTGACGTTCCAGAGCTAGGTGATTCCGTTAATCTGTCCAGGTTGAGTAAG 254330 Query 1240 GCAGTGGCCGAGAGATTT---ATTTCCAGCTATATGAACGTTAACGCTCTAGTTTCGAGT 1296 || ||||| ||||||||| ||||| ||||| || | |||| |||| | || ||| Sbjct 254329 GCTGTGGCTGAGAGATTTTTCATTTCG---TATATCAATGGTAACTCTCTGGCATCCAGT 254273 Query 1297 AACTTCATTAACGTCGTTGGGAATTTTCACGCTTACATGCAGAAGTGGCACTCGTC---T 1353 || || | || |||||| | || || |||| ||||||| | || ||| | || || | Sbjct 254272 AATTTTGTCAATGTCGTTAGCAACTTCCACGATTACATGGAAAAATGGAAGTCTTCAGGT 254213 Query 1354 CTCTCCTACGATGACCTACCTGATTTGAATGCTGAGAACTTACAATTTTATGAACACATG 1413 || || || || || || || ||| | |||||||||| || || |||||||| |||||| Sbjct 254212 CTTTCGTATGACGATCTTCCAGATCTTCATGCTGAGAATTTGCAGTTTTATGATCACATG 254153 Query 1414 GTGAAGTCGGACGTGAAACCTTCTGTGACCGATACTCTAAACGTTGACAGGCCCGTGCCT 1473 | || || || ||||||||| ||||| ||| || || || ||||||| || || || Sbjct 254152 ATAAAATCTGATGTGAAACCTGTTGTGAGCGACACACTCAATATTGACAGACCGGTTCCA 254093 Query 1474 GCTACTATAACGTTTCACAAGAAACAGATAACCTC 1508 ||||||||||||| ||| ||||| |||||||| Sbjct 254092 GCTACTATAACGTATCATAAGAAGAGTATAACCTC 254058 Score = 188 bits (208), Expect = 1e-44 Identities = 274/382 (72%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 1883 GGTGTTATGACACAGAACAATTTGATAGAATGCTGTTCTCGGGTGATGATTCACTCGCTT 1942 ||||||| || || || ||||| || | | | ||||| || |||||||| || | | Sbjct 254457 GGTGTTACGATACCGACCAATTCGAAAAGCTTTTATTCTCAGGCGATGATTCTCTAGGAT 254516 Query 1943 TCTCC-TCCATCGCTCCCGTCGGTGACCCTTCGAAGTTCACCACTCTATTCAACATGGAA 2001 | || | | || | || || ||||| || || ||||| ||||| || ||||||||| Sbjct 254517 TTTCAGTGCTTCCC-CCTGTTGGTGATCCGAGTAAATTCACAACTCTCTTTAACATGGAA 254575 Query 2002 GCGAAAGTCATGGAACCATCTGTTCCGTATATATGTTCCAAGTTCTTGTTGACTGATGAA 2061 || || || |||||||| | || || ||||| ||||| |||||||| | |||| || Sbjct 254576 GCCAAGGTGATGGAACCTGCAGTGCCATATATTTGTTCGAAGTTCTTACTCTCTGACGAG 254635 Query 2062 TTCGGTCAGACCTTTTCCGTTCCAGACCCTTTAAGGGAGATACAACGTTTGGGCTCCAAG 2121 |||||| | || |||||||||||||| || || | ||| | || || || || | ||| Sbjct 254636 TTCGGTAATACATTTTCCGTTCCAGATCCATTGCGTGAGGTTCAGCGGTTAGGAACAAAG 254695 Query 2122 AAAATCCCATATTCTG---ATGACG-ACTCTTTTCTACACGCTCATTTCATGAGTTTCGT 2177 ||||| || ||||||| |||| | | |||| | | ||||| ||||||||||| || Sbjct 254696 AAAATTCCCTATTCTGACAATGATGAATTCTTGTTT----GCTCACTTCATGAGTTTTGT 254751 Query 2178 AGATAGGCTGAAGTTTCTAGAACGCATGTCACAATTCACCATAGATCAACTGACGTTGTT 2237 ||| | |||| ||| |||| || ||||| || | || |||||||| | | || Sbjct 254752 TGATCGATTGAAATTTTTAGACCGAATGTCTCAGTCGTGTATCGATCAACTTTCTCTTTT 254811 Query 2238 CTATGAGATGAAATACAAAAAG 2259 || |||| |||||||||| ||| Sbjct 254812 CTTTGAGTTGAAATACAAGAAG 254833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9276206437500