Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_029037.2 Length=3028 Score E Sequences producing significant alignments: (Bits) Value seq10 134 3e-28 >seq10 Length=40424437 Score = 134 bits (148), Expect = 3e-28 Identities = 180/248 (73%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 1808 TATGGTCCGGAGTAACGAAATTGGAGCACGACCAAACAAGTATTGGCCGGTAGTTGCGGC 1867 ||||||||| |||||||| ||||| || ||||| || |||||||| |||| |||| Sbjct 20602922 TATGGTCCGCAGTAACGAGATTGGGAATCGCCCAAATAAATATTGGCCTATAGTCGCGGG 20602863 Query 1868 GGTAG---TAGC-TATTTGTCTTTTCGGGTTTTTAACGTTAACCAATCAAAAACACGCTA 1923 ||| |||| | ||||| | | || || || || ||||| || |||||||| | Sbjct 20602862 TATAGCAGTAGCGTGTTTGTTTCTA----TTCTTGACCTTTACCAACCAGAAACACGCGA 20602807 Query 1924 CTCAGTCTGGTGATAACATTCATAAGTTTGCTAACGGTGGTCAATATAGAGACGGTTCAA 1983 ||||||| ||||| || |||||||||||||| |||||||| ||| ||||| | Sbjct 20602806 CTCAGTCAGGTGACAATATTCATAAGTTTGCAAACGGTGGGTCTTATCAGGACGGGAGTA 20602747 Query 1984 AAAGTATTAAGTATAATTGTAATAATCCTAGAGCATACAATGGATCCTCCAGTAATAATA 2043 |||| || ||| ||| ||||| || |||||| | ||||| ||||| |||| | Sbjct 20602746 AAAGAATACTGTACAATAAGAATAACGCTTTAGCATATGACGGATCATCCAGCAATAGAA 20602687 Query 2044 CATTCTCC 2051 |||||||| Sbjct 20602686 CATTCTCC 20602679 Score = 98.7 bits (108), Expect = 2e-17 Identities = 361/546 (66%), Gaps = 36/546 (7%) Strand=Plus/Minus Query 1052 TTTTTGGCTGGTGCAATAACCGGCGTGCCCGGTTGCGGTAAGACCACTTTG-TTGAGAAA 1110 || || || | ||||||||| || || || ||| | ||||||| || ||| || ||||| Sbjct 20603684 TTCTTAGCAGCTGCAATAACTGGTGTACCGGGTAGTGGTAAGAGTACGTTGCTTAAGAAA 20603625 Query 1111 GAT-ACAGTGCGAAGGAGGTTTTAATTCATTTGTGATTTTAGGTAATCCGAGG-TCGAAA 1168 | | ||| |||| | |||||||| | ||| | || |||| |||| || Sbjct 20603624 ATTCAAAGTAGTAAGGTG--TTTAATTCTTGTGTTGTGTTGTGTAA--CGAGACTC---- 20603573 Query 1169 ACAGAATTCTCA---AATC---TTCCTAGCTG-TTATACAGCCAAGGAGATATTGTTGCT 1221 ||| || ||||| |||| ||||| ||| ||| || || || |||||| |||| || Sbjct 20603572 ACA-AAGTCTCATATAATCAGATTCCT-GCTACTTACACTGCGAAAGAGATACTGTTACT 20603515 Query 1222 TGGTATTG--CAATTAAGTGT-GAGGTGTTATTGATAGACGAGTATACATTGCTCACTAG 1278 | | | || | || | || ||||| || ||||||||||||| || ||||| Sbjct 20603514 TCCTTACGACCATATCAGATTCGACGTGTTGTTTGTAGACGAGTATACGTTAGTCACTGC 20603455 Query 1279 CGGTGAGATACTTTTGTTGCAGAAGATCACTAATTGCAGGA-TTCTGTTACTTTTTGGTG 1337 || ||||| | ||||| ||| | ||| |||| | || | | ||||||||| Sbjct 20603454 GGGAGAGATCTTGTTGTTACAGCGTAA-ACTTGGTGCAAAAATTGTTGTTGTTTTTGGTG 20603396 Query 1338 ACCGAGCTCAAGGAAGTAGTAATACTTTAAGTAGCCCAGAGTGGCTGCAGATTCCCGTTA 1397 || | ||||||||||||| || | | || || |||||| || |||| ||| Sbjct 20603395 ACAGGAGTCAAGGAAGTAGTGCTAACGCAGGAAGTCCGGAGTGGTTGGTATTTCCAGTTG 20603336 Query 1398 TATTTCAGTCCACGACTAGTAGACGTTTTGGTAAAGCTACAGCCAATCTGTGTAAAAGGC 1457 | | | || || | |||| | | |||||| |||||||| || | ||||| | | Sbjct 20603335 TGTATTGTTCTACAAATAGTTATAGGTGTGGTAAGGCTACAGCTAAATTTTGTAAGTGTC 20603276 Query 1458 AAGGTTTTGATTTTG-----AAGGCGGAGATCACGAAGATAAAGTTG--TTGAAAGCCCA 1510 | || ||||||||| || | ||||| |||||| |||||| | |||| Sbjct 20603275 AGGGGATTGATTTTGAACCTAATTCTGAGAT--TGAAGATCAAGTTGAAATTAAAG--AT 20603220 Query 1511 TACGAAGGTAGTAGTGCACCCACGGACATTAACATTGTGTTCTCTGAGGACACTAGGCGA 1570 ||||||||| | || || ||||| ||||||||| || ||||| ||||| | || Sbjct 20603219 TACGAAGGTTATTCTGAGCCAACGGAGGCTAACATTGTATTTTCTGAAGACACGCGCCGT 20603160 Query 1571 GACTTG 1576 || ||| Sbjct 20603159 GATTTG 20603154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9573684781875