Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_015782.1 Length=7275 Score E Sequences producing significant alignments: (Bits) Value seq169962 134 6e-28 seq81574 134 6e-28 seq83190 95.1 6e-16 >seq169962 Length=1034 Score = 134 bits (148), Expect = 6e-28 Identities = 76/77 (99%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 155 TACACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTG 214 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 220 TACACACAAATATCTAACACCCCGAACAGACTAATCTACACGAAAGATGTCACTTTGGTG 161 Query 215 ATTTTCCGCTTTAATTA 231 ||||||||||||||||| Sbjct 160 ATTTTCCGCTTTAATTA 144 >seq81574 Length=652 Score = 134 bits (148), Expect = 6e-28 Identities = 76/77 (99%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 155 TACACACAAATATCTAACACCCCGAACAGACTAATCTACACGGAAGATGTCACTTTGGTG 214 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 222 TACACACAAATATCTAACACCCCGAACAGACTAATCTACACGAAAGATGTCACTTTGGTG 163 Query 215 ATTTTCCGCTTTAATTA 231 ||||||||||||||||| Sbjct 162 ATTTTCCGCTTTAATTA 146 >seq83190 Length=11906 Score = 95.1 bits (104), Expect = 6e-16 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 101 TTCGGTTATATAACTTCACAGCCATCACTAATCCCCTACACAAAATGCGAGTTTTACACA 160 || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 7169 TTGGGTTATATAACTTCACAGCCATCACTAATCCCCTACACAAAATGCGAGTTTCATTCA 7228 Query 161 CAAATAT 167 ||| || Sbjct 7229 AAAAGAT 7235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23109957451824