Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq1907 159 1e-35 seq6 95.1 5e-16 seq57 87.8 7e-14 seq43 80.6 1e-11 >seq1907 Length=160928 Score = 159 bits (176), Expect = 1e-35 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| |||||| | | |||| ||||| | |||||||||| Sbjct 75870 TTTATGATACTATGCAATTTGTGCCACCAGAGGTACATACAATATGCCTGGGATTAGCCG 75811 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 75810 CTTCAATGGGATCTTTTATCCTGGTCGGAGGAACAATTACCAAACGTCTAGCATTCCC 75753 >seq6 Length=23867706 Score = 95.1 bits (104), Expect = 5e-16 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||| ||| ||| |||||| | |||| | ||||| ||||| | |||||||||| Sbjct 978937 TTTATGATAATATACAATTTGTGCCATCAGAGTTATGTACAATATGCTTGGGATTAGCCG 978878 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAG 91 ||||||||||||| ||||| ||||||||| Sbjct 978877 TTTCAATGGGATCTTTTATCTTGGTCGGAG 978848 >seq57 Length=24021853 Score = 87.8 bits (96), Expect = 7e-14 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || || | | |||| | | | |||| |||| || |||||| || Sbjct 18400945 TTTATGATACTATGTAATTTCTACCACCAAATGTACATACAATATGTGTGGGATTAACCA 18400886 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAG 112 |||||||||||| ||||| | ||||||||| |||||| ||| ||||| Sbjct 18400885 TCTCAATGGGATCTTTTATCTTAGTCGGAGGAACAATTACTAAAAATCTAG 18400835 >seq43 Length=20304914 Score = 80.6 bits (88), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||| ||||| |||||| |||||| | | |||| ||||| | ||||||||| Sbjct 18157064 TTTATGATACTGTGCAATTTGTGCCACCAGAGGTACATACAATATGCTTGGGATTAGCCA 18157123 Query 62 CTTCAATGGGATCT 75 |||||||||| ||| Sbjct 18157124 CTTCAATGGGTTCT 18157137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19046002733760