Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq7 120 1e-23 seq9 109 2e-20 >seq7 Length=151357931 Score = 120 bits (132), Expect = 1e-23 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 39 TACAGTATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAAT 98 |||| ||||| | |||||||||||||||||||||||| | || ||||||||||||||||| Sbjct 16626764 TACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTCATTCTGGTCGGAGGAGAAAT 16626823 Query 99 TACCAAACGTCTAGCATTCCC 119 ||||||||||||||||||||| Sbjct 16626824 TACCAAACGTCTAGCATTCCC 16626844 >seq9 Length=68543460 Score = 109 bits (120), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||| |||| |||| |||| || || | | |||| || | |||||||||| Sbjct 61243415 TTTATGACACTACGCAATTTGTTTCGCCTGATGTACATACAATACACATAGGATTAGCTA 61243474 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||| Sbjct 61243475 CTTCAATGGGATCTTTCATTCTGGTTGGAGGAGAAATTACCAAGCGTCTAGCATTCCC 61243532 Score = 93.3 bits (102), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 44 TATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCA 103 ||||| | |||||||| ||||||||||||||| | || |||||| || || ||||||||| Sbjct 9262107 TATGCATGGGATTAGCTGCTTCAATGGGATCT-TCATTCTGGTCAGAAGAAAAATTACCA 9262165 Query 104 AACGTCTAGCATTCCC 119 |||||||||||||||| Sbjct 9262166 AACGTCTAGCATTCCC 9262181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19043943490560