Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq5 78.8 5e-11 seq1 78.8 5e-11 >seq5 Length=28563423 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 463 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 404 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 8527 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 8468 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 16605 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 16546 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 24661 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 24602 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 32729 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 32670 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 40798 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 40739 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 48862 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 48803 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 56902 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 56843 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 64968 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 64909 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 73035 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 72976 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 81115 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 81056 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 89172 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 89113 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 97243 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 97184 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 105308 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 105249 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 113387 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 113328 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 121457 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 121398 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 129520 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 129461 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 137600 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 137541 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 145673 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 145614 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 153757 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 153698 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 161825 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 161766 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 169890 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 169831 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 177964 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 177905 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 186013 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 185954 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 194049 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 193990 >seq1 Length=75119905 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 23578761 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 23578702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28406391051984