Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq72902 145 3e-31 seq58340 145 3e-31 seq29498 145 3e-31 seq18279 127 8e-26 seq60523 93.3 2e-15 seq36375 89.7 2e-14 >seq72902 Length=152221 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||| || | | |||| |||| | |||||||||| Sbjct 71076 TTTATGATACTATGCAATTTGTGTCACCGGATGTACATACAATATGTATGGGATTAGCCG 71017 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 71016 CTTCAATGGGATCTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 70959 >seq58340 Length=129584 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||| || | | |||| |||| | |||||||||| Sbjct 114783 TTTATGATACTATGCAATTTGTGTCACCGGATGTACATACAATATGTATGGGATTAGCCG 114724 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 114723 CTTCAATGGGATCTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 114666 >seq29498 Length=171258 Score = 145 bits (160), Expect = 3e-31 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||| || | | |||| |||| | |||||||||| Sbjct 162464 TTTATGATACTATGCAATTTGTGTCACCGGATGTACATACAATATGTATGGGATTAGCCG 162523 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 162524 CTTCAATGGGATCTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 162581 >seq18279 Length=229557 Score = 127 bits (140), Expect = 8e-26 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| ||||| ||| || | | |||| |||| | ||||||||| Sbjct 114456 TTTATGATACTATGCAATTTGTGTCACCTGATGTACATACAATATGTATCAGATTAGCCG 114515 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| | || ||||| ||||||||||||| |||||||||||||||||| Sbjct 114516 CTTTAATGGGATCTTTCATTCTGGTTGGAGGAGAAATTAGCAAACGTCTAGCATTCCC 114573 >seq60523 Length=210619 Score = 93.3 bits (102), Expect = 2e-15 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4 TATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCGCT 63 |||||||||||| || ||||| | | || | | |||| |||| | |||||| |||| Sbjct 62434 TATGATACTATGTAATTTGTGTCATCGGATGTACATACAATATGTATTGGATTAATCGCT 62375 Query 64 TCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||| |||| ||| ||||| ||||| ||||||||||||||||| |||| || Sbjct 62374 TCAATGAAATCTTTTAATCTGGTTAGAGGATAAATTACCAAACGTCTAACATTTCC 62319 >seq36375 Length=616020 Score = 89.7 bits (98), Expect = 2e-14 Identities = 62/68 (91%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 52 GGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTA 111 |||||||||||| ||||||||||| | || || ||||||||||||||||||||||| ||| Sbjct 174990 GGATTAGCCGCT-CAATGGGATCT-TCATTCTAGTCGGAGGAGAAATTACCAAACGGCTA 174933 Query 112 GCATTCCC 119 |||||||| Sbjct 174932 GCATTCCC 174925 Score = 87.8 bits (96), Expect = 7e-14 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACA--GTATGCGTAGGATTAGC 59 ||||||||| ||||||| ||||| ||| || | | |||| ||||| |||||||| Sbjct 175108 TTTATGATAGTATGCAATTTGTGTCACCGGATGTACATACAAAGTATG----GGATTAGC 175053 Query 60 CGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAG 94 |||||||||||||||| | || ||||||||||||| Sbjct 175052 CGCTTCAATGGGATCTTTCATTCTGGTCGGAGGAG 175018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19031213055360