Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_015395.1
Length=6942
Score E
Sequences producing significant alignments: (Bits) Value
seq16517 230 1e-56
seq52041 168 3e-38
seq38831 163 1e-36
seq18388 100 1e-17
>seq16517
Length=1090369
Score = 230 bits (254), Expect = 1e-56
Identities = 487/708 (69%), Gaps = 34/708 (5%)
Strand=Plus/Plus
Query 6179 TAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTAGGA 6238
|||| |||||||| |||| ||||||| ||| ||||||| | | | | |||||| |
Sbjct 420892 TAGGTCATGCAAACGACCCTTAGAATTTTACGAATGCTGATACTGCTATTTTTGGTAGAA 420951
Query 6239 TAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCACCTG 6298
|||| |||||||||||||| ||||| ||||| || || | |||||| | ||||||||||
Sbjct 420952 TAATTAGTGATTTTGCTGCCCATGCATTTGGAATACTAGTTGAAGATGATTTTTCACCTG 421011
Query 6299 CCAC--TTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCCGTTGG 6356
| || || ||| | | || | | | | |||||| | | ||| |||| || |||||
Sbjct 421012 CTACCATTTATAGTGAGATGAC--AGCAAGTTACACTGTGCATTAT-GAGCCCCTGTTGG 421068
Query 6357 AAGTAC-CACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTTTATC 6415
|| | |||||| | || | ||| || | || ||||| || |||||| | | |
Sbjct 421069 -TGTGCTCACTATCACCTTCATCCCAGCAAAAGTGGCAAGACAATTCAAGTAT-TATGCC 421126
Query 6416 AATCGTCTCCCAACA---ACCTTTTCGAAAACATGACTTGGAGGCA-ATGTGGTGAAGCA 6471
||| | | ||||| | | || | || || || |||||||| || | |||||
Sbjct 421127 AATAG--TTACAACATTGATATATTTAATAATATAACATGGAGGCAGATAT-GTGAATGT 421183
Query 6472 TTTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTTG 6531
||||| || || ||||| | ||| ||||| || | ||| | ||||| |||||
Sbjct 421184 TTTGCCGTGGACATTGTTAGATGCTTTCGTGAGCTGCAATCAGATACACAAAGTTGGTTA 421243
Query 6532 GTGAAATCAAATCCTGTTCTGGCTGGCAATGCACCCTGGGTTGCACTGGATGTTACAGAT 6591
|||| ||| || | |||| ||||||| ||||| | | ||| || |||||||| || |||
Sbjct 421244 GTGAGATCCAACCTTGTTTTGGCTGGAAATGCCTCTTTGGTAGCTCTGGATGTAACTGAT 421303
Query 6592 GGACTTGATATACGTCATCTGAACCCTGAGGAGAAGAAAGTGATAGCTAGAGCAAAGAAT 6651
| | |||||| | ||| || || ||| |||||||||| || || || ||||||||
Sbjct 421304 GATTTAGATATAAGGACTCTCAATCCCGAGTAGAAGAAAGTAATTGCAAGGGCAAAGAAC 421363
Query 6652 CATCTGCTCAGGTCCATGCAGCTCAAAGGAAAAGAATCCTTGAGTGCTGAAGCCCTTTTG 6711
|| |||||| || |||||| ||||||| | || || |||| ||| ||||| | ||
Sbjct 421364 CACTTGCTCAAATCAATGCAGTTCAAAGGTAGGGAGTCTTTGACTGCGGAAGCTTTGTTA 421423
Query 6712 GAAAGCTAG-----ACTGGAAAAGAGTCT-GTCAACACTC-AGAGTTGGCGCTTTCA-CG 6763
|| || ||| | ||| || || | || ||||| | || | | | |
Sbjct 421424 GAGAGTTAGTACCAATAGGAGCTTAGACTAGCCACCACTCGTGCACCGGAGTGCTAATGG 421483
Query 6764 TTGGCATGAACGTGACCTTGGT-TTGAGGAAATAAACCCGCCCCGTTTGTTAGGAAGGTT 6822
|| | | ||||||| | ||||| |||||| ||||||| | ||||||
Sbjct 421484 TTAG--TCTCTTTGACCTTCATCATGAGG-------TCCGCCCTGTTTGTTCGAAAGGTT 421534
Query 6823 CTTTGGGGGTTGAAACTTTAGAACCAACTTTCGCTTTTTCAATTCCTA 6870
|||||||||||||| |||||||||||||||| || || | | ||||||
Sbjct 421535 CTTTGGGGGTTGAAGCTTTAGAACCAACTTT-GCATTGTTATTTCCTA 421581
>seq52041
Length=24990
Score = 168 bits (186), Expect = 3e-38
Identities = 511/773 (66%), Gaps = 51/773 (7%)
Strand=Plus/Minus
Query 6116 TGAGAAGAAGGACACTTCTGAGGAATTATTGGGTGTCAACAATGAAGGGCAGTTTTCAGA 6175
|||||||||||||||| || | | |||||||||| |||| | | | ||||
Sbjct 19245 TGAGAAGAAGGACACTACTTCGCCAACATTGGGTGTCTGTGTTGAAAGTGGGAGTACAGA 19186
Query 6176 ATCTAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTA 6235
||| |||||||| |||| | ||||| ||| ||||| | | | | | ||| |
Sbjct 19185 TAAAAGGTCATGCAAACGACCCTTAAAATTTTACGAATGCTTAGACTGCTATTTTTGGCA 19126
Query 6236 GGATAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCAC 6295
| ||| | ||||||||||||| ||||| |||| || || |||||| | || |||||||
Sbjct 19125 GAATAGTTGGTGATTTTGCTGCTCATGCCTTTGAAATACTAGCTGAATATGG-TTTTCAC 19067
Query 6296 CTGCCACTTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCCGTTG 6355
||| || | | || | | | | |||||| || | |||| ||| || ||||
Sbjct 19066 TTGCTACCGGA-----ATATGACAGCA--AGTTACACTATGCATTATG-AGCCCCTGTTG 19015
Query 6356 GAAGTACCACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTTTATC 6415
| |||||| | || | ||| || || | || || || |||||| | | ||
Sbjct 19014 GCGAGCTCACTATTACCTTCATCCCAGCAGAAATGGCTAGACAATTCAAGTAT-TATGTC 18956
Query 6416 AATCGTCTCCCAACAACCTT---TTCGAAAACATGACTTGGAGGCAATGTGGTGAAGCAT 6472
| || | ||||| | | || | || || ||||||||||| |||||| |
Sbjct 18955 CGTAGTTGC--AACAATCATATATTTAATAATATAACTTGGAGGCAGATAGGTGAATGTT 18898
Query 6473 TTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTTGG 6532
|||| | ||| || ||||| |||||| ||||| |||| ||||| |||| ||||| |
Sbjct 18897 TTGCCATTGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAATTTGGTTAG 18838
Query 6533 TGAAATCAAATCCTGTTCTGGCTGGCAATGCACCCTGGGTTGCACTGGATGTTACAGATG 6592
||| || || |||||| |||| || ||||| || || || | |||||||| || |||
Sbjct 18837 TGAGATACAACCCTGTTTTGGCCGGAAATGCCCCTTGTGTAGTTCTGGATGTAACTGATT 18778
Query 6593 GACTTGATATACGTCATCTGAACCCTGAGGAGAAGAAAGTGATAGCTAGAGCAAAGAATC 6652
| | |||||| | | || || | ||||||| |||| || || || ||| |||| |
Sbjct 18777 GTTTAGATATAAG-GACCTCAATCATGAGGAG----AAGTAATTGCAAGGGCATAGAACC 18723
Query 6653 ATCTGCTCAGGTCCATGCAGCTCAAAGGAAAAGAATCCTTGAGTGCTGAAGCCCTTTTGG 6712
| |||||| || ||| | ||||||| | || || ||| ||| |||| | || |
Sbjct 18722 ACTTGCTCAAATCAATGTTGTTCAAAGGTAGCGAGTCTTTGGCTGCAGAAGTTTTGTTAG 18663
Query 6713 AAAGCTAG-ACTGGAAAAG------AGTCTGTCAAC-ACT-------CAGAGTTGGCGCT 6757
| || ||| | | || || || || |||| ||| |||||| ||
Sbjct 18662 AGAGTTAGTAAT--AATAGGTGCTTAGACTAGCAACAACTCGTGCACCAGAGT--GC--- 18610
Query 6758 TTCACGTTGGCATGAACGTGACCTTGGTTTGAGGAAATAAACCCGCCCCGTTTGTTAGGA 6817
| ||| | | |||||||| | | || || ||| |||||||||| ||
Sbjct 18609 TAATGGTTAG--TCTCTGTGACCTT--CATCATGAGAT----CCGTCCCGTTTGTTCAGA 18558
Query 6818 AGGTTCTTTGGGGGTTGAAACTTTAGAACCAACTTTCGCTTTTTCAATTCCTA 6870
| |||||||||||||||| |||||||||||||||| || || | | ||||||
Sbjct 18557 TGATTCTTTGGGGGTTGAAGCTTTAGAACCAACTTT-GCATTGTTATTTCCTA 18506
Score = 123 bits (136), Expect = 1e-24
Identities = 289/425 (68%), Gaps = 11/425 (3%)
Strand=Plus/Plus
Query 6116 TGAGAAGAAGGACACTTCTGAGGAATTATTGGGTGTCAACAATGAAGGGCAGTTTTCAGA 6175
||||||||||||||| || | | ||||||||| | |||| | || | ||||
Sbjct 6707 TGAGAAGAAGGACACAACTTCGCCAACATTGGGTGTATATGCTGAAAGTTAGAGTACAGA 6766
Query 6176 ATCTAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTA 6235
|||| || |||| |||||||||||| ||| |||||| | | | | || |
Sbjct 6767 TAATAGGTCATACAAATGACCCTCAGAATTTTACGAATGCTGGGACTGCTATTTTTGACA 6826
Query 6236 GGATAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCAC 6295
| ||| | |||||||||||||| |||| |||| || || |||||||| |||||||||
Sbjct 6827 GAATAGTTAGTGATTTTGCTGCTGATGCCTTTGAAATACTAGCTGAAGA-TGATTTTCAC 6885
Query 6296 CTGC--CACTTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCC-G 6352
|||| || || ||| | | ||| | ||| | |||||| | | ||| |||| ||| |
Sbjct 6886 CTGCTACAATTTATAATGAGGTGAC--AACAAGTTACACTGTGCATTAT-GAGCCCCCTG 6942
Query 6353 TTGGAAGTAC-CACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTT 6411
|||| | || |||||| | || | ||| | || | ||||| || |||||| |
Sbjct 6943 TTGG-TGAACTCACTATCATCTTCATCCCAGTAGAAATGGCAAGACAATTCAAGTAT-TA 7000
Query 6412 TATCAATCGTCTC-CCAACAACCTTTTCGAAAACATGACTTGGAGGCAATGTGGTGAAGC 6470
| | || || | ||| | | || | || || ||||||||||| ||| ||
Sbjct 7001 TGCCCATAGTTGCAACAATTATATATTTAATAATATAACTTGGAGGCAGATAGGTCAATG 7060
Query 6471 ATTTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTT 6530
||||| | || || ||||| |||||| ||||| |||| ||||| ||||| |||||
Sbjct 7061 TTTTGCCATGGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAAGTTGGTT 7120
Query 6531 GGTGA 6535
||||
Sbjct 7121 AGTGA 7125
>seq38831
Length=1884
Score = 163 bits (180), Expect = 1e-36
Identities = 279/395 (71%), Gaps = 25/395 (6%)
Strand=Plus/Plus
Query 6487 GTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTTGGTGAAATCAAATCCT 6546
||||| || ||| ||||| ||||| ||||| ||||| ||||| |||| ||| || |||
Sbjct 271 GTTAGATATTTCTGTGAGCTGCAGCCAGATGCACAAAGTTGGTTAGTGAGATCCAACCCT 330
Query 6547 GTTCTGGCTGGCAATGCACCCTGGGTTGCACTGGATGTTACAGATGGACTTGATATACGT 6606
||| ||||||| ||||| || ||||| || |||||||| || ||||| | |||||| |
Sbjct 331 GTTTTGGCTGGAAATGCCCCTTGGGTAGCTCTGGATGTAACTGATGGTTTAGATATAAGG 390
Query 6607 CATCTGAACCCTGAGGAGAAGAAAGTGATAGCTAGAGCAAAGAATCATCTGCTCAGGTCC 6666
|| || |||| |||||||||||| || | | | ||||| || |||||| ||
Sbjct 391 ACTC--AATCCTGTGGAGAAGAAAGTTATTGTGAAGACGAAGAACCACTTGCTCAAATCA 448
Query 6667 ATGCAGCTCAAAGGAAAAGAATCCTTGAGTGCTGAAGCCCTTTTGGAAAGCTAG-ACTGG 6725
|||||| ||||||||| | || ||| ||| ||||| | || || || ||| |||
Sbjct 449 ATGCAGTTCAAAGGAAGGAAGTCTTTGGCTGCGGAAGCTTTGTTAGAGAGTTAGTACT-- 506
Query 6726 AAAAG------AGTCT-GTCAACACTCAGA-GTTGGCGCTTTCA-CGTTGGCATGAACGT 6776
|| || || || | || |||| | | || | | | ||| || | |
Sbjct 507 AATAGGTGCTTAGACTAGCCACTACTCGTACATCGGAGTGCTAATGGTTAGCCT--CTTT 564
Query 6777 GACCTTGGTT-TGAGGAAATAAACCCGCCCCGTTTGTTAGGAAGGTTCTTTGGGGGTTGA 6835
|||||| || ||||| | || ||||||||| ||||||||||||||||||||
Sbjct 565 GACCTTCATTATGAGGTA-------TGCTCCGTTTGTTCAGAAGGTTCTTTGGGGGTTGA 617
Query 6836 AACTTTAGAACCAACTTTCGCTTTTTCAATTCCTA 6870
| ||||| |||||||||| || |||| | ||||||
Sbjct 618 AGCTTTATAACCAACTTT-GCATTTTTATTTCCTA 651
>seq18388
Length=600
Score = 100 bits (110), Expect = 1e-17
Identities = 286/427 (67%), Gaps = 17/427 (4%)
Strand=Plus/Plus
Query 6116 TGAGAAGAAGGACACTTCTGAGGAATTATTGGGTGTCAACAATGAAGGGCAGTTTTCAGA 6175
|||||||||||||||| || | || ||||||||| |||| | || | || |
Sbjct 48 TGAGAAGAAGGACACTACTTCGCAAACATTGGGTGTATGTGCTGAAAGTGAGAGTACATA 107
Query 6176 ATCTAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTA 6235
|| | ||||||| |||||||||||| ||| ||||||| || | | ||| |
Sbjct 108 TAATAAGTCATGCAAATGACCCTCAGAATTTTACGAATGCTGAGTGCT--ATTTTTGGCA 165
Query 6236 GGATAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCAC 6295
||| | |||||||||||||| |||| || | || || |||||||| |||||| ||
Sbjct 166 TAATAGTTAGTGATTTTGCTGCTGATGCCTTCGAAATACTAGCTGAAGA-TGATTTTTAC 224
Query 6296 CTGCCAC--TTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCC-G 6352
|||| || || ||| | | ||| ||| | |||||| | | ||| ||| ||| |
Sbjct 225 CTGCTACCATTTATAGTGAGGTG--ATAACAAGTTACACTGTGCATTAT-AAGCCCCCTG 281
Query 6353 TTGGAAGTAC-CACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTT 6411
|||| | || |||||| | || | || | || | ||||| || |||||| |
Sbjct 282 TTGG-TGAACTCACTATCATCTTCATCCTAGTAGAAATGGCAAGACAATTCAAGTAT-TA 339
Query 6412 TATCAATCGTCTCCCAACAACC---TTTTCGAAAACATGACTTGGAGGCAATGTGGTGAA 6468
| | || | | |||||| | | || | || || ||||||||||| ||||||
Sbjct 340 TGCCCATAG--TTACAACAATCATATATTTAATAATATAACTTGGAGGCATATAGGTGAA 397
Query 6469 GCATTTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGG 6528
||||||| || || ||||| |||||| ||||| || ||||| |||| |||
Sbjct 398 TGTTTTGCAATGGACATTGTTAGATACTTCCGTGAGCTGTAGGAAGATGCATAAAGTTGG 457
Query 6529 TTGGTGA 6535
|| ||||
Sbjct 458 TTAGTGA 464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22081075396368
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