Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_015395.1 Length=6942 Score E Sequences producing significant alignments: (Bits) Value seq16517 230 1e-56 seq52041 168 3e-38 seq38831 163 1e-36 seq18388 100 1e-17 >seq16517 Length=1090369 Score = 230 bits (254), Expect = 1e-56 Identities = 487/708 (69%), Gaps = 34/708 (5%) Strand=Plus/Plus Query 6179 TAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTAGGA 6238 |||| |||||||| |||| ||||||| ||| ||||||| | | | | |||||| | Sbjct 420892 TAGGTCATGCAAACGACCCTTAGAATTTTACGAATGCTGATACTGCTATTTTTGGTAGAA 420951 Query 6239 TAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCACCTG 6298 |||| |||||||||||||| ||||| ||||| || || | |||||| | |||||||||| Sbjct 420952 TAATTAGTGATTTTGCTGCCCATGCATTTGGAATACTAGTTGAAGATGATTTTTCACCTG 421011 Query 6299 CCAC--TTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCCGTTGG 6356 | || || ||| | | || | | | | |||||| | | ||| |||| || ||||| Sbjct 421012 CTACCATTTATAGTGAGATGAC--AGCAAGTTACACTGTGCATTAT-GAGCCCCTGTTGG 421068 Query 6357 AAGTAC-CACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTTTATC 6415 || | |||||| | || | ||| || | || ||||| || |||||| | | | Sbjct 421069 -TGTGCTCACTATCACCTTCATCCCAGCAAAAGTGGCAAGACAATTCAAGTAT-TATGCC 421126 Query 6416 AATCGTCTCCCAACA---ACCTTTTCGAAAACATGACTTGGAGGCA-ATGTGGTGAAGCA 6471 ||| | | ||||| | | || | || || || |||||||| || | ||||| Sbjct 421127 AATAG--TTACAACATTGATATATTTAATAATATAACATGGAGGCAGATAT-GTGAATGT 421183 Query 6472 TTTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTTG 6531 ||||| || || ||||| | ||| ||||| || | ||| | ||||| ||||| Sbjct 421184 TTTGCCGTGGACATTGTTAGATGCTTTCGTGAGCTGCAATCAGATACACAAAGTTGGTTA 421243 Query 6532 GTGAAATCAAATCCTGTTCTGGCTGGCAATGCACCCTGGGTTGCACTGGATGTTACAGAT 6591 |||| ||| || | |||| ||||||| ||||| | | ||| || |||||||| || ||| Sbjct 421244 GTGAGATCCAACCTTGTTTTGGCTGGAAATGCCTCTTTGGTAGCTCTGGATGTAACTGAT 421303 Query 6592 GGACTTGATATACGTCATCTGAACCCTGAGGAGAAGAAAGTGATAGCTAGAGCAAAGAAT 6651 | | |||||| | ||| || || ||| |||||||||| || || || |||||||| Sbjct 421304 GATTTAGATATAAGGACTCTCAATCCCGAGTAGAAGAAAGTAATTGCAAGGGCAAAGAAC 421363 Query 6652 CATCTGCTCAGGTCCATGCAGCTCAAAGGAAAAGAATCCTTGAGTGCTGAAGCCCTTTTG 6711 || |||||| || |||||| ||||||| | || || |||| ||| ||||| | || Sbjct 421364 CACTTGCTCAAATCAATGCAGTTCAAAGGTAGGGAGTCTTTGACTGCGGAAGCTTTGTTA 421423 Query 6712 GAAAGCTAG-----ACTGGAAAAGAGTCT-GTCAACACTC-AGAGTTGGCGCTTTCA-CG 6763 || || ||| | ||| || || | || ||||| | || | | | | Sbjct 421424 GAGAGTTAGTACCAATAGGAGCTTAGACTAGCCACCACTCGTGCACCGGAGTGCTAATGG 421483 Query 6764 TTGGCATGAACGTGACCTTGGT-TTGAGGAAATAAACCCGCCCCGTTTGTTAGGAAGGTT 6822 || | | ||||||| | ||||| |||||| ||||||| | |||||| Sbjct 421484 TTAG--TCTCTTTGACCTTCATCATGAGG-------TCCGCCCTGTTTGTTCGAAAGGTT 421534 Query 6823 CTTTGGGGGTTGAAACTTTAGAACCAACTTTCGCTTTTTCAATTCCTA 6870 |||||||||||||| |||||||||||||||| || || | | |||||| Sbjct 421535 CTTTGGGGGTTGAAGCTTTAGAACCAACTTT-GCATTGTTATTTCCTA 421581 >seq52041 Length=24990 Score = 168 bits (186), Expect = 3e-38 Identities = 511/773 (66%), Gaps = 51/773 (7%) Strand=Plus/Minus Query 6116 TGAGAAGAAGGACACTTCTGAGGAATTATTGGGTGTCAACAATGAAGGGCAGTTTTCAGA 6175 |||||||||||||||| || | | |||||||||| |||| | | | |||| Sbjct 19245 TGAGAAGAAGGACACTACTTCGCCAACATTGGGTGTCTGTGTTGAAAGTGGGAGTACAGA 19186 Query 6176 ATCTAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTA 6235 ||| |||||||| |||| | ||||| ||| ||||| | | | | | ||| | Sbjct 19185 TAAAAGGTCATGCAAACGACCCTTAAAATTTTACGAATGCTTAGACTGCTATTTTTGGCA 19126 Query 6236 GGATAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCAC 6295 | ||| | ||||||||||||| ||||| |||| || || |||||| | || ||||||| Sbjct 19125 GAATAGTTGGTGATTTTGCTGCTCATGCCTTTGAAATACTAGCTGAATATGG-TTTTCAC 19067 Query 6296 CTGCCACTTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCCGTTG 6355 ||| || | | || | | | | |||||| || | |||| ||| || |||| Sbjct 19066 TTGCTACCGGA-----ATATGACAGCA--AGTTACACTATGCATTATG-AGCCCCTGTTG 19015 Query 6356 GAAGTACCACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTTTATC 6415 | |||||| | || | ||| || || | || || || |||||| | | || Sbjct 19014 GCGAGCTCACTATTACCTTCATCCCAGCAGAAATGGCTAGACAATTCAAGTAT-TATGTC 18956 Query 6416 AATCGTCTCCCAACAACCTT---TTCGAAAACATGACTTGGAGGCAATGTGGTGAAGCAT 6472 | || | ||||| | | || | || || ||||||||||| |||||| | Sbjct 18955 CGTAGTTGC--AACAATCATATATTTAATAATATAACTTGGAGGCAGATAGGTGAATGTT 18898 Query 6473 TTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTTGG 6532 |||| | ||| || ||||| |||||| ||||| |||| ||||| |||| ||||| | Sbjct 18897 TTGCCATTGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAATTTGGTTAG 18838 Query 6533 TGAAATCAAATCCTGTTCTGGCTGGCAATGCACCCTGGGTTGCACTGGATGTTACAGATG 6592 ||| || || |||||| |||| || ||||| || || || | |||||||| || ||| Sbjct 18837 TGAGATACAACCCTGTTTTGGCCGGAAATGCCCCTTGTGTAGTTCTGGATGTAACTGATT 18778 Query 6593 GACTTGATATACGTCATCTGAACCCTGAGGAGAAGAAAGTGATAGCTAGAGCAAAGAATC 6652 | | |||||| | | || || | ||||||| |||| || || || ||| |||| | Sbjct 18777 GTTTAGATATAAG-GACCTCAATCATGAGGAG----AAGTAATTGCAAGGGCATAGAACC 18723 Query 6653 ATCTGCTCAGGTCCATGCAGCTCAAAGGAAAAGAATCCTTGAGTGCTGAAGCCCTTTTGG 6712 | |||||| || ||| | ||||||| | || || ||| ||| |||| | || | Sbjct 18722 ACTTGCTCAAATCAATGTTGTTCAAAGGTAGCGAGTCTTTGGCTGCAGAAGTTTTGTTAG 18663 Query 6713 AAAGCTAG-ACTGGAAAAG------AGTCTGTCAAC-ACT-------CAGAGTTGGCGCT 6757 | || ||| | | || || || || |||| ||| |||||| || Sbjct 18662 AGAGTTAGTAAT--AATAGGTGCTTAGACTAGCAACAACTCGTGCACCAGAGT--GC--- 18610 Query 6758 TTCACGTTGGCATGAACGTGACCTTGGTTTGAGGAAATAAACCCGCCCCGTTTGTTAGGA 6817 | ||| | | |||||||| | | || || ||| |||||||||| || Sbjct 18609 TAATGGTTAG--TCTCTGTGACCTT--CATCATGAGAT----CCGTCCCGTTTGTTCAGA 18558 Query 6818 AGGTTCTTTGGGGGTTGAAACTTTAGAACCAACTTTCGCTTTTTCAATTCCTA 6870 | |||||||||||||||| |||||||||||||||| || || | | |||||| Sbjct 18557 TGATTCTTTGGGGGTTGAAGCTTTAGAACCAACTTT-GCATTGTTATTTCCTA 18506 Score = 123 bits (136), Expect = 1e-24 Identities = 289/425 (68%), Gaps = 11/425 (3%) Strand=Plus/Plus Query 6116 TGAGAAGAAGGACACTTCTGAGGAATTATTGGGTGTCAACAATGAAGGGCAGTTTTCAGA 6175 ||||||||||||||| || | | ||||||||| | |||| | || | |||| Sbjct 6707 TGAGAAGAAGGACACAACTTCGCCAACATTGGGTGTATATGCTGAAAGTTAGAGTACAGA 6766 Query 6176 ATCTAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTA 6235 |||| || |||| |||||||||||| ||| |||||| | | | | || | Sbjct 6767 TAATAGGTCATACAAATGACCCTCAGAATTTTACGAATGCTGGGACTGCTATTTTTGACA 6826 Query 6236 GGATAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCAC 6295 | ||| | |||||||||||||| |||| |||| || || |||||||| ||||||||| Sbjct 6827 GAATAGTTAGTGATTTTGCTGCTGATGCCTTTGAAATACTAGCTGAAGA-TGATTTTCAC 6885 Query 6296 CTGC--CACTTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCC-G 6352 |||| || || ||| | | ||| | ||| | |||||| | | ||| |||| ||| | Sbjct 6886 CTGCTACAATTTATAATGAGGTGAC--AACAAGTTACACTGTGCATTAT-GAGCCCCCTG 6942 Query 6353 TTGGAAGTAC-CACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTT 6411 |||| | || |||||| | || | ||| | || | ||||| || |||||| | Sbjct 6943 TTGG-TGAACTCACTATCATCTTCATCCCAGTAGAAATGGCAAGACAATTCAAGTAT-TA 7000 Query 6412 TATCAATCGTCTC-CCAACAACCTTTTCGAAAACATGACTTGGAGGCAATGTGGTGAAGC 6470 | | || || | ||| | | || | || || ||||||||||| ||| || Sbjct 7001 TGCCCATAGTTGCAACAATTATATATTTAATAATATAACTTGGAGGCAGATAGGTCAATG 7060 Query 6471 ATTTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTT 6530 ||||| | || || ||||| |||||| ||||| |||| ||||| ||||| ||||| Sbjct 7061 TTTTGCCATGGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAAGTTGGTT 7120 Query 6531 GGTGA 6535 |||| Sbjct 7121 AGTGA 7125 >seq38831 Length=1884 Score = 163 bits (180), Expect = 1e-36 Identities = 279/395 (71%), Gaps = 25/395 (6%) Strand=Plus/Plus Query 6487 GTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGGTTGGTGAAATCAAATCCT 6546 ||||| || ||| ||||| ||||| ||||| ||||| ||||| |||| ||| || ||| Sbjct 271 GTTAGATATTTCTGTGAGCTGCAGCCAGATGCACAAAGTTGGTTAGTGAGATCCAACCCT 330 Query 6547 GTTCTGGCTGGCAATGCACCCTGGGTTGCACTGGATGTTACAGATGGACTTGATATACGT 6606 ||| ||||||| ||||| || ||||| || |||||||| || ||||| | |||||| | Sbjct 331 GTTTTGGCTGGAAATGCCCCTTGGGTAGCTCTGGATGTAACTGATGGTTTAGATATAAGG 390 Query 6607 CATCTGAACCCTGAGGAGAAGAAAGTGATAGCTAGAGCAAAGAATCATCTGCTCAGGTCC 6666 || || |||| |||||||||||| || | | | ||||| || |||||| || Sbjct 391 ACTC--AATCCTGTGGAGAAGAAAGTTATTGTGAAGACGAAGAACCACTTGCTCAAATCA 448 Query 6667 ATGCAGCTCAAAGGAAAAGAATCCTTGAGTGCTGAAGCCCTTTTGGAAAGCTAG-ACTGG 6725 |||||| ||||||||| | || ||| ||| ||||| | || || || ||| ||| Sbjct 449 ATGCAGTTCAAAGGAAGGAAGTCTTTGGCTGCGGAAGCTTTGTTAGAGAGTTAGTACT-- 506 Query 6726 AAAAG------AGTCT-GTCAACACTCAGA-GTTGGCGCTTTCA-CGTTGGCATGAACGT 6776 || || || || | || |||| | | || | | | ||| || | | Sbjct 507 AATAGGTGCTTAGACTAGCCACTACTCGTACATCGGAGTGCTAATGGTTAGCCT--CTTT 564 Query 6777 GACCTTGGTT-TGAGGAAATAAACCCGCCCCGTTTGTTAGGAAGGTTCTTTGGGGGTTGA 6835 |||||| || ||||| | || ||||||||| |||||||||||||||||||| Sbjct 565 GACCTTCATTATGAGGTA-------TGCTCCGTTTGTTCAGAAGGTTCTTTGGGGGTTGA 617 Query 6836 AACTTTAGAACCAACTTTCGCTTTTTCAATTCCTA 6870 | ||||| |||||||||| || |||| | |||||| Sbjct 618 AGCTTTATAACCAACTTT-GCATTTTTATTTCCTA 651 >seq18388 Length=600 Score = 100 bits (110), Expect = 1e-17 Identities = 286/427 (67%), Gaps = 17/427 (4%) Strand=Plus/Plus Query 6116 TGAGAAGAAGGACACTTCTGAGGAATTATTGGGTGTCAACAATGAAGGGCAGTTTTCAGA 6175 |||||||||||||||| || | || ||||||||| |||| | || | || | Sbjct 48 TGAGAAGAAGGACACTACTTCGCAAACATTGGGTGTATGTGCTGAAAGTGAGAGTACATA 107 Query 6176 ATCTAGGGAATGCAAACACCCCTCAGAATTTCACGGATGCTGAAAGCGTGACATATGGTA 6235 || | ||||||| |||||||||||| ||| ||||||| || | | ||| | Sbjct 108 TAATAAGTCATGCAAATGACCCTCAGAATTTTACGAATGCTGAGTGCT--ATTTTTGGCA 165 Query 6236 GGATAATGAGTGATTTTGCTGCACATGCTTTTGGTATTCTCGCTGAAGAGGGATTTTCAC 6295 ||| | |||||||||||||| |||| || | || || |||||||| |||||| || Sbjct 166 TAATAGTTAGTGATTTTGCTGCTGATGCCTTCGAAATACTAGCTGAAGA-TGATTTTTAC 224 Query 6296 CTGCCAC--TTCATATTCAAGTGTCGGAACTAATTACACCATAGACTATGGAGCACCC-G 6352 |||| || || ||| | | ||| ||| | |||||| | | ||| ||| ||| | Sbjct 225 CTGCTACCATTTATAGTGAGGTG--ATAACAAGTTACACTGTGCATTAT-AAGCCCCCTG 281 Query 6353 TTGGAAGTAC-CACTATAAGGTTTAACCCGGCTGAGGTTGCAAGGACCTTTAAGTATCTT 6411 |||| | || |||||| | || | || | || | ||||| || |||||| | Sbjct 282 TTGG-TGAACTCACTATCATCTTCATCCTAGTAGAAATGGCAAGACAATTCAAGTAT-TA 339 Query 6412 TATCAATCGTCTCCCAACAACC---TTTTCGAAAACATGACTTGGAGGCAATGTGGTGAA 6468 | | || | | |||||| | | || | || || ||||||||||| |||||| Sbjct 340 TGCCCATAG--TTACAACAATCATATATTTAATAATATAACTTGGAGGCATATAGGTGAA 397 Query 6469 GCATTTGCAACTGATATAGTTAGGTACTTCAAAGAGCTACAGCCTGATGCTCAAAGCTGG 6528 ||||||| || || ||||| |||||| ||||| || ||||| |||| ||| Sbjct 398 TGTTTTGCAATGGACATTGTTAGATACTTCCGTGAGCTGTAGGAAGATGCATAAAGTTGG 457 Query 6529 TTGGTGA 6535 || |||| Sbjct 458 TTAGTGA 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22081075396368