Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_019029.1 Length=6956 Score E Sequences producing significant alignments: (Bits) Value seq16517 219 2e-53 seq38831 190 9e-45 seq52041 143 1e-30 seq18388 78.8 4e-11 >seq16517 Length=1090369 Score = 219 bits (242), Expect = 2e-53 Identities = 463/681 (68%), Gaps = 20/681 (3%) Strand=Plus/Plus Query 6175 TAGGGCACGCGAACACCCCAGCGGAGTTCACGGCTGCTGAGAGTGAGATATATGGGAGAG 6234 |||| || || ||| ||| | | || ||| |||||| | || || | ||| ||| Sbjct 420892 TAGGTCATGCAAACGACCCTTAGAATTTTACGAATGCTGATACTGCTATTTTTGGTAGAA 420951 Query 6235 TTATGAGCGACTTCGCCGCGTATGCTTTTGGCATTATGGCAGAAGAGGGTTTCTCCCCTG 6294 | || || || || || || |||| ||||| || | | ||||| | ||| || |||| Sbjct 420952 TAATTAGTGATTTTGCTGCCCATGCATTTGGAATACTAGTTGAAGATGATTTTTCACCTG 421011 Query 6295 CCACCATATACAATGAAGTGCCTGCTAGCTACACTATCGAGTACCCCCAACCTGTGGGGG 6354 | ||||| || | ||| || | || || |||||| | | || | ||||| || | Sbjct 421012 CTACCATTTATAGTGAGATGACAGCAAGTTACACTGTGCATTATGAGCC-CCTGTTGGTG 421070 Query 6355 CTCTGAATGTGTCATTTTCA--CCTGCAGAAGTTTCAAGACAGTTTAAGTATTATGCAAA 6412 || | | | || |||| || ||| |||| ||||||| || ||||||||||| || Sbjct 421071 TGCTCACTAT--CACCTTCATCCCAGCAAAAGTGGCAAGACAATTCAAGTATTATGCCAA 421128 Query 6413 CAGTTCAGGGAATAGCTGT-TTTGCTAATATAACTTGGCGACAAATTGGTGAGAGTTTTG 6471 |||| | || | | | ||| ||||||||| ||| | || || |||| |||||| Sbjct 421129 TAGTT-ACAACATTGATATATTTAATAATATAACATGGAGGCAGATATGTGAATGTTTTG 421187 Query 6472 CTGAGGACATCGTCAGGTACTTCAAAGAATTGCAGGTTGATGCACAGAGTTGGCTAGTAA 6531 | | |||||| || || | ||| || |||| ||| |||| |||||| |||| | Sbjct 421188 CCGTGGACATTGTTAGATGCTTTCGTGAGCTGCAATCAGATACACAAAGTTGGTTAGTGA 421247 Query 6532 GGTCAAACCCGGTGCTGGCTGGAAATGCTCCTTGGGTTGCGTTAGATGTGACGGATGGTC 6591 | || |||| || ||||||||||||| ||| ||| || | ||||| || |||| | Sbjct 421248 GATCCAACCTTGTTTTGGCTGGAAATGCCTCTTTGGTAGCTCTGGATGTAACTGATGATT 421307 Query 6592 TGGATGTCAGGAGGCTGAATCCAGAAGAGAAGAAGGTGATAGCAAGAGCTAAGAATCACT 6651 | ||| | |||| || ||||| || ||||||| || || ||||| || ||||| |||| Sbjct 421308 TAGATATAAGGACTCTCAATCCCGAGTAGAAGAAAGTAATTGCAAGGGCAAAGAACCACT 421367 Query 6652 TGCTGAAGTCCATGCAGTTGAAGGGAAGGGAGTCCCTGTCAGCTGAGGCCCTGCTTGAAA 6711 |||| || || |||||||| || || |||||||| || | || || || || | || | Sbjct 421368 TGCTCAAATCAATGCAGTTCAAAGGTAGGGAGTCTTTGACTGCGGAAGCTTTGTTAGAGA 421427 Query 6712 GTTAATACTTTTGGGGCCT---ACGACCAACAACT-----ATCAG-GTTCTGTTG--TGG 6760 |||| ||| | || || || | | || ||| | | | || || || | | Sbjct 421428 GTTAGTACCAATAGGAGCTTAGACTAGCCACCACTCGTGCACCGGAGTGCTAATGGTTAG 421487 Query 6761 TCACCTTGGTGTTTCTAGGGAAACACCCGCCCCGTTTGTTCGGAAGGTTCTTTGGGGGTC 6820 || | ||| || | | | |||||| ||||||||| |||||||||||||||| Sbjct 421488 TCTCTTTGACCTTCATCATG--AGGTCCGCCCTGTTTGTTCGAAAGGTTCTTTGGGGGTT 421545 Query 6821 CAAGTTTTAGAACCAACTCTG 6841 ||| ||||||||||||| || Sbjct 421546 GAAGCTTTAGAACCAACTTTG 421566 Score = 152 bits (168), Expect = 2e-33 Identities = 328/482 (68%), Gaps = 19/482 (4%) Strand=Plus/Minus Query 6380 AGAAGTTTCAAGACAGTTTAAGTATTATGCAAACAGTTCAGGGAATAGCTGT-TTTGCTA 6438 |||||| ||| ||| || ||||||||||| | ||||| ||| | | | ||| || Sbjct 422450 AGAAGTGGCAAAACAATTCAAGTATTATGCCCATAGTTCCAACAAT-GATATATTTAATA 422392 Query 6439 ATATAACTTGGCGACAAATTGGTGAGAGTTTTGCTGAGGACATCGTCAGGTACTTCAAAG 6498 ||||||||||| |||| || | ||| ||||| | |||||| || || |||||| | Sbjct 422391 ATATAACTTGGAGACAGATAGATGAATGTTTTATCGTGGACATTGTTAGATACTTCCGTG 422332 Query 6499 AATTGCAGGTTGATGCACAGAGTTGGCTAGTAAGGTCAAACCCGGTGCTGGCTGGAAATG 6558 | || || |||||| | |||||| |||| | || || || | ||| ||||||| Sbjct 422331 AGCTGTAGCCAGATGCATAAAGTTGGTTAGTGAAATCCAATCCTATTTTGGTCGGAAATG 422272 Query 6559 CTCCTTGGGTTGCGTTAGATGTGACGGATGGTCTGGATGTCAGGAGGCTGAATCCAGAAG 6618 | |||||||| || | ||||| | |||||| | ||| | | || | ||||| || | Sbjct 422271 CCCCTTGGGTAGCTCTGGATGTAATTGATGGTTTAGATATAAAGACTTTCAATCCTGAGG 422212 Query 6619 AGAAGAAGGTGATAGCAAGAGCTAAGAATCACTTGCTGAAGTCCATGCAGTTGAAGGGAA 6678 |||||| || || ||||| || ||||| || ||||| || || |||||||| || || | Sbjct 422211 GGAAGAAAGTAATTGCAAGGGCAAAGAACCATTTGCTCAAATCAATGCAGTTCAAAGGTA 422152 Query 6679 GGGAGTCCCTGTCAGCTGAGGCCCTGCTTGAAAGTTAATACTTTTGGGGCCT---ACGAC 6735 ||||| | || | || | || || | || ||||| || | | | || || | Sbjct 422151 GGGAGACTTTGGCTGCGAAAGCTTTGTTAGAGAGTTAGTAATAATATGTGCTTAGACTAG 422092 Query 6736 CAACAACT-----ATCAG-GTTCTGTTG--TGGTCACCTTGGTGTT-TCTAGGGAAACAC 6786 | || ||| | ||| || || || | || | ||| || | | | | Sbjct 422091 CCACCACTCGTGCACCAGAGTGCTAATGGTTAGTGTCTTTGACCTTCACCATG---AGGT 422035 Query 6787 CCGCCCCGTTTGTTCGGAAGGTTCTTTGGGGGTCCAAGTTTTAGAACCAACTCTG--TTT 6844 | |||||||||||||| ||||||||||||| || ||| |||||||| |||| || ||| Sbjct 422034 CTGCCCCGTTTGTTCGAAAGGTTCTTTGGGTGTTAAAGCTTTAGAACTAACTTTGCATTT 421975 Query 6845 TA 6846 || Sbjct 421974 TA 421973 >seq38831 Length=1884 Score = 190 bits (210), Expect = 9e-45 Identities = 352/506 (70%), Gaps = 23/506 (5%) Strand=Plus/Plus Query 6375 CCTGCAGAAGTTTCAAGACAGTTTAAGTATTATGCAAACAGTTCAGGGAATAGCTGT-TT 6433 || ||| |||| ||||||| || ||||||||||| | | ||| ||| | | | || Sbjct 163 CCAGCAAAAGTGGCAAGACAATTCAAGTATTATGCTCATAATTCCAACAAT-GATATATT 221 Query 6434 TGCTAATATAACTTGGCGACAAATTGGTGAGAGTTTTGCTGAGGACATCGTCAGGTACTT 6493 | |||||||||||| | || || ||||| |||||| | | || | || || || || Sbjct 222 TAATAATATAACTTGATGGCAGATGGGTGATTGTTTTGTCGTGAACTTTGTTAGATATTT 281 Query 6494 CAAAGAATTGCAGGTTGATGCACAGAGTTGGCTAGTAAGGTCAAACCCGGTGCTGGCTGG 6553 | || ||||| |||||||| |||||| |||| || || ||||| || ||||||| Sbjct 282 CTGTGAGCTGCAGCCAGATGCACAAAGTTGGTTAGTGAGATCCAACCCTGTTTTGGCTGG 341 Query 6554 AAATGCTCCTTGGGTTGCGTTAGATGTGACGGATGGTCTGGATGTCAGGAGGCTGAATCC 6613 |||||| |||||||| || | ||||| || |||||| | ||| | |||| || ||||| Sbjct 342 AAATGCCCCTTGGGTAGCTCTGGATGTAACTGATGGTTTAGATATAAGGA--CTCAATCC 399 Query 6614 AGAAGAGAAGAAGGTGATAG-CAAGAGCTAAGAATCACTTGCTGAAGTCCATGCAGTTGA 6672 | |||||||| || || | |||| | ||||| |||||||| || || |||||||| | Sbjct 400 TGTGGAGAAGAAAGTTATTGTGAAGA-CGAAGAACCACTTGCTCAAATCAATGCAGTTCA 458 Query 6673 AGGGAAGGGAGTCCCTGTCAGCTGAGGCCCTGCTTGAAAGTTAATACTTTTGGGGCCTAC 6732 | |||||| |||| || | || || || || | || ||||| |||| | || || Sbjct 459 AAGGAAGGAAGTCTTTGGCTGCGGAAGCTTTGTTAGAGAGTTAGTACTAATAGGTGCTTA 518 Query 6733 GACCAACAACT--------ATCAG-GTTCTGTTG--TGGTCACCTTGGTGTTTCTAGGGA 6781 ||| | | ||| ||| | || || || | | | | ||| || | || Sbjct 519 GACTAGCCACTACTCGTACATCGGAGTGCTAATGGTTAGCCTCTTTGACCTTCATTATGA 578 Query 6782 AACACCCGCCCCGTTTGTTCGGAAGGTTCTTTGGGGGTCCAAGTTTTAGAACCAACTCTG 6841 | || |||||||||| ||||||||||||||||| ||| |||| |||||||| || Sbjct 579 GGTA--TGCTCCGTTTGTTCAGAAGGTTCTTTGGGGGTTGAAGCTTTATAACCAACTTTG 636 Query 6842 ---TTTTAGATATTATATAATATTAG 6864 ||||| | || | |||||||| Sbjct 637 CATTTTTATTTCCTA-AAAATATTAG 661 >seq52041 Length=24990 Score = 143 bits (158), Expect = 1e-30 Identities = 487/747 (65%), Gaps = 35/747 (5%) Strand=Plus/Minus Query 6110 ATTGAGGAGGAGGACATTACTGAGGCAGCATTGGGTGAGTGTTTTCAA----GGAGTACG 6165 |||||| || |||||| |||| | || ||||||||| ||| || || ||||||| Sbjct 19247 ATTGAGAAGAAGGACACTACTTCGCCAACATTGGGTGTCTGTGTTGAAAGTGGGAGTACA 19188 Query 6166 TGAAAAACTTAGGGCACGCGAACACCCCAGCGGAGTTCACGGCTGCTGAGAGTGAGATAT 6225 || ||| ||| || || ||| ||| | || ||| |||| ||| || || | Sbjct 19187 -GATAAA---AGGTCATGCAAACGACCCTTAAAATTTTACGAATGCTTAGACTGCTATTT 19132 Query 6226 ATGGGAGAGTTATGAGCGACTTCGCCGCGTATGCTTTTGGCATTATGGCAGAAGAGGGTT 6285 ||| ||| | | | || || || || |||| |||| || | || ||| | |||| Sbjct 19131 TTGGCAGAATAGTTGGTGATTTTGCTGCTCATGCCTTTGAAATACTAGCTGAATATGGTT 19072 Query 6286 TCTCCCCTGCCACCATATACAATGAAGTGCCTGCTAGCTACACTATCGAGTACCCCCAAC 6345 | || | ||| ||| | |||| | || || |||||||| | || | | Sbjct 19071 T-TCACTTGCTACCGGAAT--ATGA-----CAGCAAGTTACACTATGCATTATGAGCC-C 19021 Query 6346 CTGTGGGGGCTCTGAATGTGTCATTTTCACCTGCAGAAGTTTCAAGACAGTTTAAGTATT 6405 |||| || | || | | | | || || |||||| | | ||||| || ||||||| Sbjct 19020 CTGTTGGCGAGCTCACTATTACCTTCATCCCAGCAGAAATGGCTAGACAATTCAAGTATT 18961 Query 6406 ATGCAAACAGTTCAGGGAATAGCTGTTTTGCTAATATAACTTGGCGACAAATTGGTGAGA 6465 ||| |||| ||| ||| ||||||||||||| | || || ||||| Sbjct 18960 ATGTCCGTAGTTGCAACAATCATATATTTAATAATATAACTTGGAGGCAGATAGGTGAAT 18901 Query 6466 GTTTTGCTGAGGACATCGTCAGGTACTTCAAAGAATTGCAGGTTGATGCACAGAGTTGGC 6525 ||||||| ||||| || || |||||| || || || |||||||| | |||| Sbjct 18900 GTTTTGCCATTGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAATTTGGT 18841 Query 6526 TAGTAAGGTCAAACCCGGTGCTGGCTGGAAATGCTCCTTGGGTTGCGTTAGATGTGACGG 6585 |||| || | ||||| || |||| |||||||| ||||| || | | ||||| || | Sbjct 18840 TAGTGAGATACAACCCTGTTTTGGCCGGAAATGCCCCTTGTGTAGTTCTGGATGTAACTG 18781 Query 6586 ATGGTCTGGATGTCAGGAGGCTGAATCCAGAAGAGAAGAAGGTGATAGCAAGAGCTAAGA 6645 || || | ||| | |||| || |||| || ||||| || || ||||| || ||| Sbjct 18780 ATTGTTTAGATATAAGGA-CCTCAATCATGAGGAGAA----GTAATTGCAAGGGCATAGA 18726 Query 6646 ATCACTTGCTGAAGTCCATGCAGTTGAAGGGAAGGGAGTCCCTGTCAGCTGAGGCCCTGC 6705 | |||||||| || || ||| ||| || || || ||||| || | || || | || Sbjct 18725 ACCACTTGCTCAAATCAATGTTGTTCAAAGGTAGCGAGTCTTTGGCTGCAGAAGTTTTGT 18666 Query 6706 TTGAAAGTTAATACTTTTGGGGCCT---ACGACCAACAACT-----ATCAG-GTTCTGTT 6756 | || ||||| || | | || || || | |||||||| | ||| || || | Sbjct 18665 TAGAGAGTTAGTAATAATAGGTGCTTAGACTAGCAACAACTCGTGCACCAGAGTGCTAAT 18606 Query 6757 G--TGGTCACCTTGGTGTTTCTAGGGAAACACCCGCCCCGTTTGTTCGGAAGGTTCTTTG 6814 | | ||| | || || | | | | ||| ||||||||||| || | ||||||| Sbjct 18605 GGTTAGTCTCTGTGACCTTCATCATG--AGATCCGTCCCGTTTGTTCAGATGATTCTTTG 18548 Query 6815 GGGGTCCAAGTTTTAGAACCAACTCTG 6841 ||||| ||| ||||||||||||| || Sbjct 18547 GGGGTTGAAGCTTTAGAACCAACTTTG 18521 Score = 91.5 bits (100), Expect = 7e-15 Identities = 223/332 (67%), Gaps = 7/332 (2%) Strand=Plus/Plus Query 6201 TTCACGGCTGCTGAGAGTGAGATATATGGGAGAGTTATGAGCGACTTCGCCGCGTATGCT 6260 || ||| ||||| || || || | || ||| | | || || || || || |||| Sbjct 6796 TTTACGAATGCTGGGACTGCTATTTTTGACAGAATAGTTAGTGATTTTGCTGCTGATGCC 6855 Query 6261 TTTGGCATTATGGCAGAAGAGGGTTTCTCCCCTGCCACCATATACAATGAAGTGCCTGCT 6320 |||| || | || ||||| | ||| || ||||| || || || ||||| ||| | | Sbjct 6856 TTTGAAATACTAGCTGAAGATGATTT-TCACCTGCTACAATTTATAATGAGGTGACAACA 6914 Query 6321 AGCTACACTATCGAGTACCCCCAACCTGTGGGGGCTCTGAATGTGTCATTTTCA--CCTG 6378 || |||||| | | || | ||||| || | || | | | ||| |||| || | Sbjct 6915 AGTTACACTGTGCATTATGAGCCCCCTGTTGGTGAACTCACTAT--CATCTTCATCCCAG 6972 Query 6379 CAGAAGTTTCAAGACAGTTTAAGTATTATGCAAACAGTT-CAGGGAATAGCTGTTTTGCT 6437 |||| | ||||||| || ||||||||||| | |||| || | || | ||| | Sbjct 6973 TAGAAATGGCAAGACAATTCAAGTATTATGCCCATAGTTGCAACAATTATATATTTAA-T 7031 Query 6438 AATATAACTTGGCGACAAATTGGTGAGAGTTTTGCTGAGGACATCGTCAGGTACTTCAAA 6497 |||||||||||| | || || ||| | ||||||| |||||| || || |||||| Sbjct 7032 AATATAACTTGGAGGCAGATAGGTCAATGTTTTGCCATGGACATTGTTAGATACTTCCGT 7091 Query 6498 GAATTGCAGGTTGATGCACAGAGTTGGCTAGT 6529 || || || |||||||| |||||| |||| Sbjct 7092 GAGCTGTAGCCAGATGCACAAAGTTGGTTAGT 7123 >seq18388 Length=600 Score = 78.8 bits (86), Expect = 4e-11 Identities = 277/426 (65%), Gaps = 15/426 (4%) Strand=Plus/Plus Query 6110 ATTGAGGAGGAGGACATTACTGAGGCAGCATTGGGTGAGTGTTTTCAAGG----AGTACG 6165 |||||| || |||||| |||| | | ||||||||| ||| | || | ||||| Sbjct 46 ATTGAGAAGAAGGACACTACTTCGCAAACATTGGGTGTATGTGCTGAAAGTGAGAGTACA 105 Query 6166 TGAAAAACTTAGGGCACGCGAACACCCCAGCGGAGTTCACGGCTGCTGAGAGTGAGATAT 6225 | || || | || || || ||| | | || ||| ||||||| || || | Sbjct 106 TATAA----TAAGTCATGCAAATGACCCTCAGAATTTTACGAATGCTGAG--TGCTATTT 159 Query 6226 ATGGGAGAGTTATGAGCGACTTCGCCGCGTATGCTTTTGGCATTATGGCAGAAGAGGGTT 6285 ||| | | | | || || || || || |||| || | || | || ||||| | || Sbjct 160 TTGGCATAATAGTTAGTGATTTTGCTGCTGATGCCTTCGAAATACTAGCTGAAGATGATT 219 Query 6286 TCTCCCCTGCCACCATATACAATGAAGTGCCTGCTAGCTACACTATCGAGTACCCCCAAC 6345 | | || ||| ||||| || | ||| ||| | || |||||| | | || | | Sbjct 220 TTTACC-TGCTACCATTTATAGTGAGGTGATAACAAGTTACACTGTGCATTATAAGCCCC 278 Query 6346 CTGTGGGGGCTCTGAATGTGTCATTTTCA-CCT-GCAGAAGTTTCAAGACAGTTTAAGTA 6403 |||| || | || | | | ||| |||| ||| | |||| | ||||||| || ||||| Sbjct 279 CTGTTGGTGAACTCACTAT--CATCTTCATCCTAGTAGAAATGGCAAGACAATTCAAGTA 336 Query 6404 TTATGCAAACAGTTCAGGGAATAGCTGTTTTGCTAATATAACTTGGCGACAAATTGGTGA 6463 |||||| | |||| ||| ||| ||||||||||||| | || || ||||| Sbjct 337 TTATGCCCATAGTTACAACAATCATATATTTAATAATATAACTTGGAGGCATATAGGTGA 396 Query 6464 GAGTTTTGCTGAGGACATCGTCAGGTACTTCAAAGAATTGCAGGTTGATGCACAGAGTTG 6523 ||||||| |||||| || || |||||| || || ||| |||||| | ||||| Sbjct 397 ATGTTTTGCAATGGACATTGTTAGATACTTCCGTGAGCTGTAGGAAGATGCATAAAGTTG 456 Query 6524 GCTAGT 6529 | |||| Sbjct 457 GTTAGT 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22125838653760