Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_019030.1 Length=7001 Score E Sequences producing significant alignments: (Bits) Value seq16517 313 1e-81 seq38831 241 6e-60 seq52041 239 2e-59 seq18388 152 2e-33 >seq16517 Length=1090369 Score = 313 bits (346), Expect = 1e-81 Identities = 360/483 (75%), Gaps = 1/483 (0%) Strand=Plus/Plus Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293 ||||| | |||||||||||||||||| || |||||||| | |||||| | ||| || ||| Sbjct 420951 ATAATTAGTGATTTTGCTGCCCATGCATTTGGAATACTAGTTGAAGATGATTTTTCACCT 421010 Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353 || ||||| || ||||| || | | | |||||| | | |||| || || ||||| Sbjct 421011 GCTACCATTTATAGTGAGATGACAGCAAGTTACACTGTGCATTATGA-GCCCCTGTTGGT 421069 Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413 ||||| | || | ||||| || | |||| | ||||| |||||||||||| Sbjct 421070 GTGCTCACTATCACCTTCATCCCAGCAAAAGTGGCAAGACAATTCAAGTATTATGCCAAT 421129 Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473 || | ||| | |||||||| |||| ||||| ||||| |||||| | ||| ||||| Sbjct 421130 AGTTACAACATTGATATATTTAATAATATAACATGGAGGCAGATATGTGAATGTTTTGCC 421189 Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGA 6533 | ||| ||||| || | ||| ||||| ||| | ||| ||||||||||| |||| ||| Sbjct 421190 GTGGACATTGTTAGATGCTTTCGTGAGCTGCAATCAGATACACAAAGTTGGTTAGTGAGA 421249 Query 6534 TCCAACCCTGTATTGGCTGGAAATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTG 6593 ||||||| ||| |||||||||||||| | | ||| || || ||||||||||||| | | Sbjct 421250 TCCAACCTTGTTTTGGCTGGAAATGCCTCTTTGGTAGCTCTGGATGTAACTGATGATTTA 421309 Query 6594 GATATTAGGAGGCTGAATCCTGAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTA 6653 ||||| |||| || ||||| ||| |||| || || || || || || || || ||| | Sbjct 421310 GATATAAGGACTCTCAATCCCGAGTAGAAGAAAGTAATTGCAAGGGCAAAGAACCACTTG 421369 Query 6654 CTGAAGTCCATGCAGTTGAAGGGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGT 6713 || || || |||||||| || || |||||||| || | |||||||||||| | |||||| Sbjct 421370 CTCAAATCAATGCAGTTCAAAGGTAGGGAGTCTTTGACTGCGGAAGCTTTGTTAGAGAGT 421429 Query 6714 TAG 6716 ||| Sbjct 421430 TAG 421432 Score = 257 bits (284), Expect = 7e-65 Identities = 343/475 (72%), Gaps = 9/475 (2%) Strand=Plus/Minus Query 6242 TGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCTGCAACCAT 6301 |||||||| |||||||||||| |||||||| |||||||| ||||| | ||||| | Sbjct 422579 TGATTTTGTTGCCCATGCCTTTGGAATACTAGCTGAAGATGGTTTTTTACCTGC-----T 422525 Query 6302 ATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGCAACATCAC 6361 || ||||| ||| || || |||||| | | |||| || |||| | |||| Sbjct 422524 ATT-AGTGAGGTGGTAGACAGTTACACTGTGCATTATGAGCTCCCTATTGGTGAGCTCAC 422466 Query 6362 TGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAATAGCTCCAA 6421 | || | |||| | | ||| | ||||| ||||||||| |||| ||||| Sbjct 422465 TACC---TTCATCCCAGTAGAAGTGGCAAAACAATTCAAGTATTATGCCCATAGTTCCAA 422409 Query 6422 TAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCTGAGGATAT 6481 || |||||||| |||| ||||||||||||||||||| ||| ||| | ||| || Sbjct 422408 CAATGATATATTTAATAATATAACTTGGAGACAGATAGATGAATGTTTTATCGTGGACAT 422349 Query 6482 TGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGATCCAACCC 6541 ||| || |||||| ||||| | || |||||| |||||||| |||| | |||||| || Sbjct 422348 TGTTAGATACTTCCGTGAGCTGTAGCCAGATGCATAAAGTTGGTTAGTGAAATCCAATCC 422289 Query 6542 TGTATTGGCTGGAAATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTGGATATTAG 6601 | | |||| |||||||| || ||||| || || ||||||| ||||||| | ||||| | Sbjct 422288 TATTTTGGTCGGAAATGCCCCTTGGGTAGCTCTGGATGTAATTGATGGTTTAGATATAAA 422229 Query 6602 GAGGCTGAATCCTGAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTACTGAAGTC 6661 || | |||||||||| ||| || || || || || || || || || | || || || Sbjct 422228 GACTTTCAATCCTGAGGGGAAGAAAGTAATTGCAAGGGCAAAGAACCATTTGCTCAAATC 422169 Query 6662 CATGCAGTTGAAGGGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGTTAG 6716 |||||||| || || |||||| | || | ||| |||||||| | ||||||||| Sbjct 422168 AATGCAGTTCAAAGGTAGGGAGACTTTGGCTGCGAAAGCTTTGTTAGAGAGTTAG 422114 >seq38831 Length=1884 Score = 241 bits (266), Expect = 6e-60 Identities = 259/342 (76%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 6375 CCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAATAGCTCCAATAACAATATATTT 6434 ||||| || | |||| | ||||| |||||||| ||| ||||| || |||||||| Sbjct 163 CCAGCAAAAGTGGCAAGACAATTCAAGTATTATGCTCATAATTCCAACAATGATATATTT 222 Query 6435 GATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCTGAGGATATTGTGAGGTACTTC 6494 |||| |||||||| | ||||| || || |||| | | | |||| || || ||| Sbjct 223 AATAATATAACTTGATGGCAGATGGGTGATTGTTTTGTCGTGAACTTTGTTAGATATTTC 282 Query 6495 AAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGATCCAACCCTGTATTGGCTGGA 6554 ||||| || || ||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 283 TGTGAGCTGCAGCCAGATGCACAAAGTTGGTTAGTGAGATCCAACCCTGTTTTGGCTGGA 342 Query 6555 AATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTGGATATTAGGAGGCTGAATCCT 6614 ||||| || ||||| || || ||||||||||||||| | ||||| |||| || |||||| Sbjct 343 AATGCCCCTTGGGTAGCTCTGGATGTAACTGATGGTTTAGATATAAGGA--CTCAATCCT 400 Query 6615 GAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTACTGAAGTCCATGCAGTTGAAG 6674 | |||||| || || || | | | || || ||| | || || || |||||||| || Sbjct 401 GTGGAGAAGAAAGTTATTGTGAAGACGAAGAACCACTTGCTCAAATCAATGCAGTTCAAA 460 Query 6675 GGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGTTAG 6716 |||||| |||| || | |||||||||||| | ||||||||| Sbjct 461 GGAAGGAAGTCTTTGGCTGCGGAAGCTTTGTTAGAGAGTTAG 502 >seq52041 Length=24990 Score = 239 bits (264), Expect = 2e-59 Identities = 344/479 (72%), Gaps = 22/479 (5%) Strand=Plus/Minus Query 6242 TGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCTGCAACC-- 6299 |||||||||||| |||||||| | |||||| |||||| | ||||| || | ||| ||| Sbjct 19115 TGATTTTGCTGCTCATGCCTTTGAAATACTAGCTGAATATGGTTT-TCACTTGCTACCGG 19057 Query 6300 -ATAT-ACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGCAACA 6357 |||| |||| |||| ||||| || | |||| || || |||||| | Sbjct 19056 AATATGACAGC-AAGT----------TACACTATGCATTATGA-GCCCCTGTTGGCGAGC 19009 Query 6358 TCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAATAGCT 6417 ||||| || || | ||||| | || | || | ||||| ||||||| | ||| | Sbjct 19008 TCACTATTACCTTCATCCCAGCAGAAATGGCTAGACAATTCAAGTATTATGTCCGTAGTT 18949 Query 6418 CCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCTGAGG 6477 ||| || |||||||| |||| ||||||||||| |||||||| ||| ||||| | Sbjct 18948 GCAACAATCATATATTTAATAATATAACTTGGAGGCAGATAGGTGAATGTTTTGCCATTG 18889 Query 6478 ATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGATCCA 6537 | ||||| || |||||| ||||| | || |||||||||| |||| |||| |||| || Sbjct 18888 ACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAATTTGGTTAGTGAGATACA 18829 Query 6538 ACCCTGTATTGGCTGGAAATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTGGATA 6597 ||||||| ||||| |||||||| || || || | || |||||||||||| || | |||| Sbjct 18828 ACCCTGTTTTGGCCGGAAATGCCCCTTGTGTAGTTCTGGATGTAACTGATTGTTTAGATA 18769 Query 6598 TTAGGAGGCTGAATCCTGAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTACTGA 6657 | |||| || |||| ||||||||| || || || || || | || ||| | || | Sbjct 18768 TAAGGA-CCTCAATCATGAGGAGAA----GTAATTGCAAGGGCATAGAACCACTTGCTCA 18714 Query 6658 AGTCCATGCAGTTGAAGGGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGTTAG 6716 | || ||| ||| || || || ||||| || | || |||| |||| | ||||||||| Sbjct 18713 AATCAATGTTGTTCAAAGGTAGCGAGTCTTTGGCTGCAGAAGTTTTGTTAGAGAGTTAG 18655 Score = 161 bits (178), Expect = 4e-36 Identities = 214/296 (72%), Gaps = 1/296 (0%) Strand=Plus/Plus Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293 ||| | | |||||||||||| ||||||| | |||||| |||||||| | ||| || ||| Sbjct 6829 ATAGTTAGTGATTTTGCTGCTGATGCCTTTGAAATACTAGCTGAAGATGATTT-TCACCT 6887 Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353 || || || || | ||| ||| ||| | |||||| | | |||| | || ||||| Sbjct 6888 GCTACAATTTATAATGAGGTGACAACAAGTTACACTGTGCATTATGAGCCCCCTGTTGGT 6947 Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413 | ||||| | || | |||| | || |||| | ||||| ||||||||| || Sbjct 6948 GAACTCACTATCATCTTCATCCCAGTAGAAATGGCAAGACAATTCAAGTATTATGCCCAT 7007 Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473 || | ||| || |||||||| |||| ||||||||||| |||||||| || ||||| Sbjct 7008 AGTTGCAACAATTATATATTTAATAATATAACTTGGAGGCAGATAGGTCAATGTTTTGCC 7067 Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGT 6529 ||| ||||| || |||||| ||||| | || ||||||||||||||| |||| Sbjct 7068 ATGGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAAGTTGGTTAGT 7123 Score = 147 bits (162), Expect = 1e-31 Identities = 211/296 (71%), Gaps = 1/296 (0%) Strand=Plus/Minus Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293 ||| | | |||||||| ||| ||||||| | |||||| |||||||| ||||| || | Sbjct 3816 ATAGTTAGTGATTTTGTTGCTGATGCCTTTGAAATACTAGCTGAAGATGGTTT-TCATAT 3758 Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353 || ||||| || ||||| ||| ||| | |||||| | | |||| | || ||||| Sbjct 3757 GCTACCATTTATAGTGAGGTGACAACAAGTTACACTGTGCATTATGAACCCCCTGTTGGT 3698 Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413 | ||||| | |||| ||| | || |||| | ||||| ||||||||| || Sbjct 3697 GAACTCACTATCATCTTTATCCCATTAGAAATGGCAAGAAAATTCAAGTATTATGCCCAT 3638 Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473 || | || || |||||||| |||| ||||||||||| ||||||| ||| ||||| Sbjct 3637 AGTTGTAACAATCATATATTTAATAATATAACTTGGAGGAAGATAGGTGAATATTTTGCA 3578 Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGT 6529 ||| ||| | || |||||| ||||| | || |||||||||||||| |||| Sbjct 3577 ATGGACATTATTAGATACTTCCGTGAGCTGTAGCCATATGCACAAAGTTGGTTAGT 3522 >seq18388 Length=600 Score = 152 bits (168), Expect = 2e-33 Identities = 212/296 (72%), Gaps = 1/296 (0%) Strand=Plus/Plus Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293 ||| | | |||||||||||| ||||||||| |||||| |||||||| | ||| | ||| Sbjct 168 ATAGTTAGTGATTTTGCTGCTGATGCCTTCGAAATACTAGCTGAAGATGATTTTTA-CCT 226 Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353 || ||||| || ||||| ||| |||| | |||||| | | ||| | || ||||| Sbjct 227 GCTACCATTTATAGTGAGGTGATAACAAGTTACACTGTGCATTATAAGCCCCCTGTTGGT 286 Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413 | ||||| | || | | || | || |||| | ||||| ||||||||| || Sbjct 287 GAACTCACTATCATCTTCATCCTAGTAGAAATGGCAAGACAATTCAAGTATTATGCCCAT 346 Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473 || | ||| || |||||||| |||| ||||||||||| || ||||| ||| ||||| Sbjct 347 AGTTACAACAATCATATATTTAATAATATAACTTGGAGGCATATAGGTGAATGTTTTGCA 406 Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGT 6529 ||| ||||| || |||||| ||||| | |||||| |||||||| |||| Sbjct 407 ATGGACATTGTTAGATACTTCCGTGAGCTGTAGGAAGATGCATAAAGTTGGTTAGT 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22269720552520