Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_019030.1
Length=7001
Score E
Sequences producing significant alignments: (Bits) Value
seq16517 313 1e-81
seq38831 241 6e-60
seq52041 239 2e-59
seq18388 152 2e-33
>seq16517
Length=1090369
Score = 313 bits (346), Expect = 1e-81
Identities = 360/483 (75%), Gaps = 1/483 (0%)
Strand=Plus/Plus
Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293
||||| | |||||||||||||||||| || |||||||| | |||||| | ||| || |||
Sbjct 420951 ATAATTAGTGATTTTGCTGCCCATGCATTTGGAATACTAGTTGAAGATGATTTTTCACCT 421010
Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353
|| ||||| || ||||| || | | | |||||| | | |||| || || |||||
Sbjct 421011 GCTACCATTTATAGTGAGATGACAGCAAGTTACACTGTGCATTATGA-GCCCCTGTTGGT 421069
Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413
||||| | || | ||||| || | |||| | ||||| ||||||||||||
Sbjct 421070 GTGCTCACTATCACCTTCATCCCAGCAAAAGTGGCAAGACAATTCAAGTATTATGCCAAT 421129
Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473
|| | ||| | |||||||| |||| ||||| ||||| |||||| | ||| |||||
Sbjct 421130 AGTTACAACATTGATATATTTAATAATATAACATGGAGGCAGATATGTGAATGTTTTGCC 421189
Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGA 6533
| ||| ||||| || | ||| ||||| ||| | ||| ||||||||||| |||| |||
Sbjct 421190 GTGGACATTGTTAGATGCTTTCGTGAGCTGCAATCAGATACACAAAGTTGGTTAGTGAGA 421249
Query 6534 TCCAACCCTGTATTGGCTGGAAATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTG 6593
||||||| ||| |||||||||||||| | | ||| || || ||||||||||||| | |
Sbjct 421250 TCCAACCTTGTTTTGGCTGGAAATGCCTCTTTGGTAGCTCTGGATGTAACTGATGATTTA 421309
Query 6594 GATATTAGGAGGCTGAATCCTGAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTA 6653
||||| |||| || ||||| ||| |||| || || || || || || || || ||| |
Sbjct 421310 GATATAAGGACTCTCAATCCCGAGTAGAAGAAAGTAATTGCAAGGGCAAAGAACCACTTG 421369
Query 6654 CTGAAGTCCATGCAGTTGAAGGGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGT 6713
|| || || |||||||| || || |||||||| || | |||||||||||| | ||||||
Sbjct 421370 CTCAAATCAATGCAGTTCAAAGGTAGGGAGTCTTTGACTGCGGAAGCTTTGTTAGAGAGT 421429
Query 6714 TAG 6716
|||
Sbjct 421430 TAG 421432
Score = 257 bits (284), Expect = 7e-65
Identities = 343/475 (72%), Gaps = 9/475 (2%)
Strand=Plus/Minus
Query 6242 TGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCTGCAACCAT 6301
|||||||| |||||||||||| |||||||| |||||||| ||||| | ||||| |
Sbjct 422579 TGATTTTGTTGCCCATGCCTTTGGAATACTAGCTGAAGATGGTTTTTTACCTGC-----T 422525
Query 6302 ATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGCAACATCAC 6361
|| ||||| ||| || || |||||| | | |||| || |||| | ||||
Sbjct 422524 ATT-AGTGAGGTGGTAGACAGTTACACTGTGCATTATGAGCTCCCTATTGGTGAGCTCAC 422466
Query 6362 TGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAATAGCTCCAA 6421
| || | |||| | | ||| | ||||| ||||||||| |||| |||||
Sbjct 422465 TACC---TTCATCCCAGTAGAAGTGGCAAAACAATTCAAGTATTATGCCCATAGTTCCAA 422409
Query 6422 TAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCTGAGGATAT 6481
|| |||||||| |||| ||||||||||||||||||| ||| ||| | ||| ||
Sbjct 422408 CAATGATATATTTAATAATATAACTTGGAGACAGATAGATGAATGTTTTATCGTGGACAT 422349
Query 6482 TGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGATCCAACCC 6541
||| || |||||| ||||| | || |||||| |||||||| |||| | |||||| ||
Sbjct 422348 TGTTAGATACTTCCGTGAGCTGTAGCCAGATGCATAAAGTTGGTTAGTGAAATCCAATCC 422289
Query 6542 TGTATTGGCTGGAAATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTGGATATTAG 6601
| | |||| |||||||| || ||||| || || ||||||| ||||||| | ||||| |
Sbjct 422288 TATTTTGGTCGGAAATGCCCCTTGGGTAGCTCTGGATGTAATTGATGGTTTAGATATAAA 422229
Query 6602 GAGGCTGAATCCTGAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTACTGAAGTC 6661
|| | |||||||||| ||| || || || || || || || || || | || || ||
Sbjct 422228 GACTTTCAATCCTGAGGGGAAGAAAGTAATTGCAAGGGCAAAGAACCATTTGCTCAAATC 422169
Query 6662 CATGCAGTTGAAGGGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGTTAG 6716
|||||||| || || |||||| | || | ||| |||||||| | |||||||||
Sbjct 422168 AATGCAGTTCAAAGGTAGGGAGACTTTGGCTGCGAAAGCTTTGTTAGAGAGTTAG 422114
>seq38831
Length=1884
Score = 241 bits (266), Expect = 6e-60
Identities = 259/342 (76%), Gaps = 2/342 (1%)
Strand=Plus/Plus
Query 6375 CCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAATAGCTCCAATAACAATATATTT 6434
||||| || | |||| | ||||| |||||||| ||| ||||| || ||||||||
Sbjct 163 CCAGCAAAAGTGGCAAGACAATTCAAGTATTATGCTCATAATTCCAACAATGATATATTT 222
Query 6435 GATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCTGAGGATATTGTGAGGTACTTC 6494
|||| |||||||| | ||||| || || |||| | | | |||| || || |||
Sbjct 223 AATAATATAACTTGATGGCAGATGGGTGATTGTTTTGTCGTGAACTTTGTTAGATATTTC 282
Query 6495 AAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGATCCAACCCTGTATTGGCTGGA 6554
||||| || || ||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 283 TGTGAGCTGCAGCCAGATGCACAAAGTTGGTTAGTGAGATCCAACCCTGTTTTGGCTGGA 342
Query 6555 AATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTGGATATTAGGAGGCTGAATCCT 6614
||||| || ||||| || || ||||||||||||||| | ||||| |||| || ||||||
Sbjct 343 AATGCCCCTTGGGTAGCTCTGGATGTAACTGATGGTTTAGATATAAGGA--CTCAATCCT 400
Query 6615 GAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTACTGAAGTCCATGCAGTTGAAG 6674
| |||||| || || || | | | || || ||| | || || || |||||||| ||
Sbjct 401 GTGGAGAAGAAAGTTATTGTGAAGACGAAGAACCACTTGCTCAAATCAATGCAGTTCAAA 460
Query 6675 GGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGTTAG 6716
|||||| |||| || | |||||||||||| | |||||||||
Sbjct 461 GGAAGGAAGTCTTTGGCTGCGGAAGCTTTGTTAGAGAGTTAG 502
>seq52041
Length=24990
Score = 239 bits (264), Expect = 2e-59
Identities = 344/479 (72%), Gaps = 22/479 (5%)
Strand=Plus/Minus
Query 6242 TGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCTGCAACC-- 6299
|||||||||||| |||||||| | |||||| |||||| | ||||| || | ||| |||
Sbjct 19115 TGATTTTGCTGCTCATGCCTTTGAAATACTAGCTGAATATGGTTT-TCACTTGCTACCGG 19057
Query 6300 -ATAT-ACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGCAACA 6357
|||| |||| |||| ||||| || | |||| || || |||||| |
Sbjct 19056 AATATGACAGC-AAGT----------TACACTATGCATTATGA-GCCCCTGTTGGCGAGC 19009
Query 6358 TCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAATAGCT 6417
||||| || || | ||||| | || | || | ||||| ||||||| | ||| |
Sbjct 19008 TCACTATTACCTTCATCCCAGCAGAAATGGCTAGACAATTCAAGTATTATGTCCGTAGTT 18949
Query 6418 CCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCTGAGG 6477
||| || |||||||| |||| ||||||||||| |||||||| ||| ||||| |
Sbjct 18948 GCAACAATCATATATTTAATAATATAACTTGGAGGCAGATAGGTGAATGTTTTGCCATTG 18889
Query 6478 ATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGTTAGATCCA 6537
| ||||| || |||||| ||||| | || |||||||||| |||| |||| |||| ||
Sbjct 18888 ACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAATTTGGTTAGTGAGATACA 18829
Query 6538 ACCCTGTATTGGCTGGAAATGCACCATGGGTTGCACTTGATGTAACTGATGGTCTGGATA 6597
||||||| ||||| |||||||| || || || | || |||||||||||| || | ||||
Sbjct 18828 ACCCTGTTTTGGCCGGAAATGCCCCTTGTGTAGTTCTGGATGTAACTGATTGTTTAGATA 18769
Query 6598 TTAGGAGGCTGAATCCTGAGGAGAAAAAGGTGATCGCTAGAGCTAAAAATCACCTACTGA 6657
| |||| || |||| ||||||||| || || || || || | || ||| | || |
Sbjct 18768 TAAGGA-CCTCAATCATGAGGAGAA----GTAATTGCAAGGGCATAGAACCACTTGCTCA 18714
Query 6658 AGTCCATGCAGTTGAAGGGAAGGGAGTCCCTGTCCGCGGAAGCTTTGCTGGAGAGTTAG 6716
| || ||| ||| || || || ||||| || | || |||| |||| | |||||||||
Sbjct 18713 AATCAATGTTGTTCAAAGGTAGCGAGTCTTTGGCTGCAGAAGTTTTGTTAGAGAGTTAG 18655
Score = 161 bits (178), Expect = 4e-36
Identities = 214/296 (72%), Gaps = 1/296 (0%)
Strand=Plus/Plus
Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293
||| | | |||||||||||| ||||||| | |||||| |||||||| | ||| || |||
Sbjct 6829 ATAGTTAGTGATTTTGCTGCTGATGCCTTTGAAATACTAGCTGAAGATGATTT-TCACCT 6887
Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353
|| || || || | ||| ||| ||| | |||||| | | |||| | || |||||
Sbjct 6888 GCTACAATTTATAATGAGGTGACAACAAGTTACACTGTGCATTATGAGCCCCCTGTTGGT 6947
Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413
| ||||| | || | |||| | || |||| | ||||| ||||||||| ||
Sbjct 6948 GAACTCACTATCATCTTCATCCCAGTAGAAATGGCAAGACAATTCAAGTATTATGCCCAT 7007
Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473
|| | ||| || |||||||| |||| ||||||||||| |||||||| || |||||
Sbjct 7008 AGTTGCAACAATTATATATTTAATAATATAACTTGGAGGCAGATAGGTCAATGTTTTGCC 7067
Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGT 6529
||| ||||| || |||||| ||||| | || ||||||||||||||| ||||
Sbjct 7068 ATGGACATTGTTAGATACTTCCGTGAGCTGTAGCCAGATGCACAAAGTTGGTTAGT 7123
Score = 147 bits (162), Expect = 1e-31
Identities = 211/296 (71%), Gaps = 1/296 (0%)
Strand=Plus/Minus
Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293
||| | | |||||||| ||| ||||||| | |||||| |||||||| ||||| || |
Sbjct 3816 ATAGTTAGTGATTTTGTTGCTGATGCCTTTGAAATACTAGCTGAAGATGGTTT-TCATAT 3758
Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353
|| ||||| || ||||| ||| ||| | |||||| | | |||| | || |||||
Sbjct 3757 GCTACCATTTATAGTGAGGTGACAACAAGTTACACTGTGCATTATGAACCCCCTGTTGGT 3698
Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413
| ||||| | |||| ||| | || |||| | ||||| ||||||||| ||
Sbjct 3697 GAACTCACTATCATCTTTATCCCATTAGAAATGGCAAGAAAATTCAAGTATTATGCCCAT 3638
Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473
|| | || || |||||||| |||| ||||||||||| ||||||| ||| |||||
Sbjct 3637 AGTTGTAACAATCATATATTTAATAATATAACTTGGAGGAAGATAGGTGAATATTTTGCA 3578
Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGT 6529
||| ||| | || |||||| ||||| | || |||||||||||||| ||||
Sbjct 3577 ATGGACATTATTAGATACTTCCGTGAGCTGTAGCCATATGCACAAAGTTGGTTAGT 3522
>seq18388
Length=600
Score = 152 bits (168), Expect = 2e-33
Identities = 212/296 (72%), Gaps = 1/296 (0%)
Strand=Plus/Plus
Query 6234 ATAATGAATGATTTTGCTGCCCATGCCTTCGGAATACTGGCTGAAGAAGGTTTCTCGCCT 6293
||| | | |||||||||||| ||||||||| |||||| |||||||| | ||| | |||
Sbjct 168 ATAGTTAGTGATTTTGCTGCTGATGCCTTCGAAATACTAGCTGAAGATGATTTTTA-CCT 226
Query 6294 GCAACCATATACAGTGAAGTGTTAACCAATTACACCATAGACTATGGTGCACCAGTTGGC 6353
|| ||||| || ||||| ||| |||| | |||||| | | ||| | || |||||
Sbjct 227 GCTACCATTTATAGTGAGGTGATAACAAGTTACACTGTGCATTATAAGCCCCCTGTTGGT 286
Query 6354 AACATCACTGTTGAATTTAGTCCAGCGAACATTTCAAGGGAGTTCAAATATTATGCCAAT 6413
| ||||| | || | | || | || |||| | ||||| ||||||||| ||
Sbjct 287 GAACTCACTATCATCTTCATCCTAGTAGAAATGGCAAGACAATTCAAGTATTATGCCCAT 346
Query 6414 AGCTCCAATAACAATATATTTGATAACATAACTTGGAGACAGATAGGGGAAGCATTTGCT 6473
|| | ||| || |||||||| |||| ||||||||||| || ||||| ||| |||||
Sbjct 347 AGTTACAACAATCATATATTTAATAATATAACTTGGAGGCATATAGGTGAATGTTTTGCA 406
Query 6474 GAGGATATTGTGAGGTACTTCAAGGAGCTACAACCTGATGCACAAAGTTGGCTAGT 6529
||| ||||| || |||||| ||||| | |||||| |||||||| ||||
Sbjct 407 ATGGACATTGTTAGATACTTCCGTGAGCTGTAGGAAGATGCATAAAGTTGGTTAGT 462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22269720552520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |