Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_001747.1 Length=5987 Score E Sequences producing significant alignments: (Bits) Value seq40061 150 7e-33 seq46 136 2e-28 seq14 100 1e-17 seq101 95.1 5e-16 seq12 91.5 6e-15 >seq40061 Length=156973 Score = 150 bits (166), Expect = 7e-33 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||||||| |||||| ||| || | | |||| ||||| | |||||||||| Sbjct 71903 TTTATGATACTATGCAATTTGTGCCACCCGATGTGCATACAATATGCATGGGATTAGCCG 71844 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 |||||||||||||| | || ||||||||||||||||||||||||||||||||| |||| Sbjct 71843 CTTCAATGGGATCTTTCATTCTGGTCGGAGGAGAAATTACCAAACGTCTAGCACTCCC 71786 >seq46 Length=1555977 Score = 136 bits (150), Expect = 2e-28 Identities = 101/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||||||||||| || |||||| ||| || || | |||| ||||| | |||||||||| Sbjct 557186 TTTATGATACTATAAAATTTGTGCCACCCGACATGCATACAATATGCATGGGATTAGCCG 557245 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| | || ||| |||||||||||||||||||| ||||||||||||| Sbjct 557246 CTTTAATGGGATCTTTCATTCTGATCGGAGGAGAAATTACCAAATGTCTAGCATTCCC 557303 >seq14 Length=24379743 Score = 100 bits (110), Expect = 1e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 45 ATGCGTAGGATTAGCCGCTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAA 104 |||| | | |||||||||||||||| ||||| |||| |||||| |||||||||||||||| Sbjct 5304104 ATGCATGGAATTAGCCGCTTCAATGAGATCTTTTATTCTGGTCAGAGGAGAAATTACCAA 5304045 Query 105 ACGTCTAGCATTCCC 119 | ||||||||||||| Sbjct 5304044 ATGTCTAGCATTCCC 5304030 >seq101 Length=1173216 Score = 95.1 bits (104), Expect = 5e-16 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 ||||| ||||| ||||| |||||| | | || | | |||| ||||| | ||||| ||| Sbjct 358757 TTTATAATACTTTGCAATTTGTGCCATCCGATGTGCATACAATATGCATGGGATTTGCCA 358816 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATT 116 |||||||||||||| | || | | ||| |||||||||||||| |||||| ||| Sbjct 358817 CTTCAATGGGATCTTTCATTTTAATTGGAAGAGAAATTACCAAATGTCTAGAATT 358871 >seq12 Length=28800575 Score = 91.5 bits (100), Expect = 6e-15 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 2 TTTATGATACTATGCAAATTGTGCTACCAGAAATCCGTACAGTATGCGTAGGATTAGCCG 61 |||||||||||||| || || ||||||| || | | | || || | |||||||| | Sbjct 25638127 TTTATGATACTATGAAATTTATGCTACCCGATGAGCAAATAATACGCATGGGATTAGCTG 25638068 Query 62 CTTCAATGGGATCTGTTATCCTGGTCGGAGGAGAAATTACCAAACGTCTAGCATTCCC 119 ||| |||||||||| | || ||| || | ||||||||| ||||| ||||||||| || Sbjct 25638067 CTTTAATGGGATCTTTCATTCTGATCAAATGAGAAATTATCAAACATCTAGCATTTCC 25638010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19038054492480